Pedobacter ginsengisoli: CPT03_08870
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Entry
CPT03_08870 CDS
T05145
Name
(GenBank) 3-deoxy-8-phosphooctulonate synthase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs00541
Biosynthesis of various nucleotide sugars
pgs01100
Metabolic pathways
pgs01250
Biosynthesis of nucleotide sugars
Module
pgs_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CPT03_08870
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pgs01005
]
CPT03_08870
Enzymes [BR:
pgs01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
CPT03_08870
Lipopolysaccharide biosynthesis proteins [BR:
pgs01005
]
Lipid A
CPT03_08870
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Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
Crystall_2
NeuB
PHP
Motif
Other DBs
NCBI-ProteinID:
ATP56576
UniProt:
A0A2D1U4P4
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Position
complement(2147410..2148225)
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AA seq
271 aa
AA seq
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MINFPLDNFKNQESGNFFLMAGPCAIEGEEIALRIAEKIVTITDKLQIPYIFKGSYRKAN
RSKGSSFTGIGDEKALKILEKVSKTFGVPTVTDIHESEEAAMAAAYVDVLQIPAFLCRQT
DLLIAAAQTNKVVNVKKGQFLSAGSMKFAVEKIVEAGNNKVILTDRGNTFGYQDLIVDYR
GLPEMQSFGVPVVMDCTHSLQQPNQSTGVTGGKPALIETIAKAAIAVGADGLFIETHPDP
ANAKSDGANMLHLDLLEDLLVKLIRLRKAVI
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatttccctttagataatttcaaaaatcaagaatcaggtaatttctttttaatg
gctggcccttgtgctattgaaggtgaagaaatagccttacgcatagccgaaaaaatagtc
actataacagataaactacaaataccatatatttttaagggttcttaccgtaaagctaac
cgctctaaaggcagttcttttaccggaattggcgacgagaaagcgcttaaaattttagag
aaagtaagtaaaacctttggcgtgccaacggttacagatattcatgaaagcgaagaggct
gcaatggctgctgcttatgttgatgtcttgcagattcctgcttttttatgccgacaaact
gatttgctaattgctgcggctcaaaccaataaggttgttaatgttaaaaaaggacaattt
ttatctgcgggatcaatgaaattcgctgtagaaaaaattgtagaggccggaaataacaag
gttatccttaccgatagaggtaatacttttggatatcaggatcttattgtagattatcgt
ggattgccagaaatgcaatcttttggtgtacctgtagttatggattgtacacattcttta
caacagccaaatcaaagcactggtgtaactggaggtaaacctgcattaatagaaacaatt
gctaaagctgcaattgctgttggagctgatggtttatttattgaaacgcatcctgatccc
gcaaatgcaaaatcagatggagccaatatgctgcatctagatttgcttgaggatcttttg
gttaaactaataagattaagaaaagcggttatttaa
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