KEGG   Pedobacter ginsengisoli: CPT03_09240
Entry
CPT03_09240       CDS       T05145                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_09240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_09240
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_09240
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 PhyR_sigma2 Sigma70_ECF GerE HTH_24 DUF7123 FAM198 PIN_2
Other DBs
NCBI-ProteinID: ATP56645
UniProt: A0A2D1U4X9
LinkDB
Position
2238059..2238583
AA seq 174 aa
MFKAHYKELHSYANIMLRDQDIAEEIVQSMFLKFWEKRELLNVQTSIKAYLYKCVYNDSL
NYLKHQKVKTKYQDFTIHTMNNHHEAASSRVELNELEFKLQEALNELPEHCRTIFQMSRF
EELKYREIAEQLDLSIKTVENQMGKALKILRLKLADFITLILPGIIMFYKDFFN
NT seq 525 nt   +upstreamnt  +downstreamnt
atgttcaaagctcattataaagagcttcactcctacgctaatataatgcttagagatcaa
gacattgcagaagaaattgttcaatctatgtttcttaaattctgggaaaagagagaattg
ttaaacgtacaaacttcaataaaagcatatctctacaaatgtgtttataacgatagctta
aattaccttaagcatcaaaaagttaaaacaaaatatcaggattttacaattcacaccatg
aacaatcatcatgaggcagcatcatcaagagtagagcttaatgagcttgaatttaagctg
caagaagcattaaatgaattacctgaacattgcagaactatttttcagatgagcaggttt
gaggaattaaaatatagagagatagctgaacagctggacctttcaattaaaacagttgag
aaccagatggggaaagctttaaaaatattacgtttgaaactagccgatttcattacacta
attttaccaggcataataatgttttacaaggatttttttaattaa

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