Pedobacter ginsengisoli: CPT03_09240
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Entry
CPT03_09240 CDS
T05145
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPT03_09240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgs03021
]
CPT03_09240
Transcription machinery [BR:
pgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPT03_09240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma2
Sigma70_ECF
GerE
HTH_24
DUF7123
FAM198
PIN_2
Motif
Other DBs
NCBI-ProteinID:
ATP56645
UniProt:
A0A2D1U4X9
LinkDB
All DBs
Position
2238059..2238583
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AA seq
174 aa
AA seq
DB search
MFKAHYKELHSYANIMLRDQDIAEEIVQSMFLKFWEKRELLNVQTSIKAYLYKCVYNDSL
NYLKHQKVKTKYQDFTIHTMNNHHEAASSRVELNELEFKLQEALNELPEHCRTIFQMSRF
EELKYREIAEQLDLSIKTVENQMGKALKILRLKLADFITLILPGIIMFYKDFFN
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaagctcattataaagagcttcactcctacgctaatataatgcttagagatcaa
gacattgcagaagaaattgttcaatctatgtttcttaaattctgggaaaagagagaattg
ttaaacgtacaaacttcaataaaagcatatctctacaaatgtgtttataacgatagctta
aattaccttaagcatcaaaaagttaaaacaaaatatcaggattttacaattcacaccatg
aacaatcatcatgaggcagcatcatcaagagtagagcttaatgagcttgaatttaagctg
caagaagcattaaatgaattacctgaacattgcagaactatttttcagatgagcaggttt
gaggaattaaaatatagagagatagctgaacagctggacctttcaattaaaacagttgag
aaccagatggggaaagctttaaaaatattacgtttgaaactagccgatttcattacacta
attttaccaggcataataatgttttacaaggatttttttaattaa
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