Pedobacter ginsengisoli: CPT03_12355
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Entry
CPT03_12355 CDS
T05145
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
pgs
Pedobacter ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgs01002
]
CPT03_12355
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgs01011
]
CPT03_12355
Peptidases and inhibitors [BR:
pgs01002
]
Cysteine peptidases
Family C82
CPT03_12355
Peptidoglycan biosynthesis and degradation proteins [BR:
pgs01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
CPT03_12355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
WH_MCM2
Motif
Other DBs
NCBI-ProteinID:
ATP59229
UniProt:
A0A2D1UCC3
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All DBs
Position
complement(3001214..3002752)
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AA seq
512 aa
AA seq
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MLSSCNWFKDVPEVGIVLSDHFKNKLYKNFDTAVYNVVFKKHLDSLKSKFSNPNTLTNYY
YSNEYKPELVTRFFVNGGLDSLENYIGRSEEHGFNPDLFRYKQLGSLLAILQANKFKSID
EVYPVIADLELNAAEGLIKYNNFVYYGSINPRKLFSRYYVPVKRPDSLSVTEVLQTKDIQ
KLLTDIQPSSPDYHVFQGKLSKYKADSGSKSYMVKTIMVNMERLRWKLPELGDEYVQVNI
PDFSLTWFKDQDTLTQMKVCVGGKREEGYADKIKQYLKSGNLDDKPKNHETPLLYSKLNS
IQVNPIWNIPVSIAQSEIYWQAVRDPYYLSNSNIKVYYKGKQVMDPDTIQWSKYSREKLP
FQFKQGSGEGNALGKFKFIFDNGSSIYLHDTNNKSAFSRANRAISHGCVRVEKPLQFAET
LVKDKYEYDQLRMEVNLPPIDTTKMEIYRKKMAKKADTVNVYKLKPKWFGVKKPVPLIIN
YITAWSQNGSLQFRPDVYGLDETLWDAMKKFM
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgctttcatcgtgtaattggtttaaagatgtaccggaagttggtattgtgctgtcggat
catttcaagaataaactgtataaaaatttcgatactgctgtttataatgttgtttttaag
aaacaccttgattccttaaagtccaaattttctaacccaaataccttaacaaattattat
tattcaaatgaatataaaccagagctggttactagattctttgttaatggtgggcttgat
agtcttgagaattatataggcaggagtgaagagcatggttttaaccctgatttatttagg
tataaacaacttggatctctgttggctatactacaagctaataaatttaaatcgatagat
gaagtttatcctgtaattgctgatttggagctgaacgctgcggaagggcttattaaatac
aataattttgtttactatggcagcatcaacccaaggaaattgtttagcaggtattatgtg
cctgtaaaaagaccggatagtctaagtgtaactgaggttttgcaaacgaaggacattcaa
aaattactaacagatatccagccttcttctccggattatcatgtgtttcagggtaaactg
tcgaaatataaggccgactctggcagtaaaagttatatggtaaaaaccattatggttaat
atggagcgtttgcgctggaaattgccggaacttggtgatgaatatgtacaggtaaatatt
cccgatttctctcttacctggtttaaggaccaggatacgctaacccaaatgaaggtgtgt
gtaggaggtaagcgcgaagaagggtatgctgataaaattaaacagtatttaaaatcgggt
aatcttgatgataaacctaaaaatcatgaaacgccacttctatacagtaaacttaactct
atacaggttaacccgatatggaatattccggttagtattgcacaaagtgaaatttactgg
caggcggttagagatccgtactatctttctaacagcaatataaaagtatattataaaggc
aagcaggtgatggaccctgataccattcagtggagtaagtattcaagagaaaaattgcct
tttcagtttaagcaaggttctggtgagggaaatgctttaggtaagtttaaatttatattc
gataacgggtcgagcatctacctgcatgatacgaataataaaagtgcattttcaagagct
aaccgtgcaataagccatggttgtgttcgtgtagaaaaaccgttacaatttgccgaaacc
ctggttaaagataaatacgaatatgatcaattaaggatggaggtaaacctgccaccaatt
gatactacaaaaatggagatttatcgtaaaaaaatggccaaaaaggccgatactgtaaat
gtttataaattaaaacctaaatggtttggagttaaaaagcctgttccgctgatcatcaat
tatataactgcatggtcgcaaaatggcagcttgcaattccgccctgatgtttatggttta
gacgaaactttatgggatgctatgaaaaaattcatgtaa
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