KEGG   Pedobacter ginsengisoli: CPT03_12685
Entry
CPT03_12685       CDS       T05145                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_12685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_12685
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_12685
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 HTH_11 GerE Sigma70_ECF HTH_24 HTH_23 HTH_40 PF0610-like_N
Other DBs
NCBI-ProteinID: ATP57267
UniProt: A0A2D1U6Q8
LinkDB
Position
complement(3071946..3072488)
AA seq 180 aa
MKGLTDLALLDLLKEDSDDAFNEIYARYWDVVYAVACKKLNNKEEAKDVVHDLFMLIWIK
RHSICITTTFIGYIYIILKNKLTDLNRRQTLRIKHDDEVVKTHPFADNDVFEQLISKDMA
QQLQLEIQDMPVGMRKVFLMSREEQLSVNEIAGKLSISSQTVKNQITSALKRLRSKYQAN
NT seq 543 nt   +upstreamnt  +downstreamnt
ttgaagggcctgactgatttagctttattggatttactaaaagaagatagcgacgacgca
tttaacgaaatttatgcacgctattgggatgtggtatatgccgtggcatgtaaaaaatta
aacaataaagaggaggctaaagatgtggtgcatgatctgtttatgctcatctggattaaa
cgtcattctatttgtattaccaccacctttatcggatacatttacataatccttaaaaat
aaacttactgatcttaatcgccgacaaacacttcgtataaagcatgacgacgaagtagta
aagacacatccttttgccgataatgatgtgtttgaacaactcatttctaaagatatggct
cagcaactccagctagaaattcaggatatgcctgttggaatgcgaaaagtatttttaatg
agtagagaagaacagctttcagttaatgaaatagccggtaaattatccatttcatctcaa
accgtaaagaatcaaattaccagtgcgttaaaaagattgaggtctaaataccaggcaaac
taa

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