KEGG   Pedobacter ginsengisoli: CPT03_13275
Entry
CPT03_13275       CDS       T05145                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_13275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_13275
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_13275
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_28 DUF722 GerE HTH_3 HTH_29 HTH_Tnp_4 SpoIIID HTH_24 HTH_31
Other DBs
NCBI-ProteinID: ATP57373
UniProt: A0A2D1U6Z3
LinkDB
Position
complement(3212834..3213421)
AA seq 195 aa
MNIYNNYSEKELITLLREGDTDALSRLYYLYVKQLKYFVLRTAKSSLLAEDVVHDTFIKV
WENRDKIDCELPFKPYLYTIARRHLLNLLKRAQHEINIVDEMRRSVINEENSTELLLDYS
ESSSIFQEAIKSLPEQRREVFIRCRIQGLTYKQAAVELGISESTVNNQMVKALKSIRGFI
TIRSAMILLIAATIK
NT seq 588 nt   +upstreamnt  +downstreamnt
atgaacatttataataattacagtgaaaaggaattaattacacttcttagggagggtgat
acggatgctttaagtagactgtattatttatatgttaaacaattgaaatattttgttcta
agaacggcgaagtcatcacttcttgcggaagatgttgttcatgatacttttattaaagtc
tgggaaaatcgggataaaatagattgtgaacttccatttaagccctatttgtatactatt
gcacggagacacctacttaatctgttgaaacgagcccaacatgaaataaacattgtggac
gaaatgcgcagatctgtaataaatgaagaaaattccacagaacttttacttgactatagt
gaaagcagctctatatttcaagaagctataaaaagtttacctgaacaaaggagagaggtc
tttattcgttgtcgaatacaggggctaacttataaacaagctgcagtagaactaggtatt
tctgaaagtactgtaaataatcaaatggtaaaggctttaaaatcaattagaggatttatt
accatcagaagtgcgatgattttgctcattgctgcaacaataaaataa

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