KEGG   Pedobacter ginsengisoli: CPT03_13365
Entry
CPT03_13365       CDS       T05145                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_13365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_13365
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_13365
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 GerE Sigma70_r2 Sigma70_ECF HTH_24 PF0610-like_N HTH_23 HTH_28 HTH_11 HTH_Tnp_ISL3 HTH_AsnC-type HTH_40 HTH_29 HTH_38 HTH_10 Fe_dep_repress HTH_5 HTH_DeoR HTH_17 MarR_2 DUF733
Other DBs
NCBI-ProteinID: ATP57387
UniProt: A0A2D1U714
LinkDB
Position
complement(3235212..3235769)
AA seq 185 aa
MDWGKAEDSVLIKYLKDGNRIAFNAIYFRYAEVLYQYALNILKEPDDCEDVVQNIFIWLW
ENRQQLQISNLRGYLLAATKFNLTRKIVSSKRREEILSSTFQADPIYEEESLEIKELRSA
IFEGIQLLPPKARQIYQLSREDHLSNKEIAARLGISEKTVEAQITISLKKLKTHLGKMSF
WIFFL
NT seq 558 nt   +upstreamnt  +downstreamnt
atggattggggaaaagcggaagatagtgtactgatcaagtaccttaaagatggaaatagg
attgctttcaatgctatctattttagatatgcggaagtactttatcaatatgctttaaat
atactgaaggagccggatgattgtgaggatgttgttcagaatattttcatatggctgtgg
gaaaatcggcagcagcttcagatctcaaacctcaggggttaccttttagcggctactaaa
tttaatttgacccgaaagattgtttccagcaagcgccgggaggaaattctttccagtact
tttcaagccgacccgatctatgaagaggaaagtcttgagatcaaggagctccgctcggcg
atattcgaagggattcaattgcttccaccaaaagccagacagatttatcagctgagcagg
gaggatcatttatcaaataaggaaattgcagcaaggcttgggatttccgagaaaactgtg
gaagcccagatcaccatttccctgaaaaaattaaagactcatctgggaaaaatgtctttc
tggatattttttttataa

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