Pedobacter ginsengisoli: CPT03_19740
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Entry
CPT03_19740 CDS
T05145
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPT03_19740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgs03019
]
CPT03_19740
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPT03_19740
Messenger RNA biogenesis [BR:
pgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPT03_19740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Helicase_C_2
Flavi_DEAD
UvrD-helicase
PhoH
Cas3-like_C_2
Z1
Motif
Other DBs
NCBI-ProteinID:
ATP58536
UniProt:
A0A2D1UAB7
LinkDB
All DBs
Position
complement(4707576..4708808)
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AA seq
410 aa
AA seq
DB search
MDFKDFNFNPDLFEGLSAMGFRDATPIQQQAIPLISSKKDLIACAQTGTGKTGAYLLPIM
NMIAATEDRHNNTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKRSM
REGVDIIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLPENRQ
TVMFSATMPPKIRKLAGSLLKHPEQINISISKPAEGISQQVYLIHDEQKVPLLSSILKTD
EYKSIIVFASTKEKVKNLGKVFRNLGLKAEAFHSDLGQKEREGILLKFKNRQLPIIIGTD
VLSRGIDVEGIDLVINFDVPHDAEDYVHRIGRTARAATKGTAITLVNNRDKRKLASIEKL
IEKQIERMPLPEHLGEAPLETAADLSEKPVRHNKPKRKFWKKKPAKNTGS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ttggattttaaagactttaattttaaccctgacttgtttgaagggttatcggcgatgggg
tttcgtgatgccacgcccatccagcaacaggcaatccctctcatttcaagtaaaaaagat
ctaattgcctgtgcacaaacgggaactggaaaaactggcgcttaccttttgcctatcatg
aatatgattgcagcaactgaagatcgtcataacaatactctaattctggcgcctacacgc
gaactcgcacaacaaatagacttacaggttgaagcactttcttacttcacaaacattagc
tcgctaactgtatatggtggtggagatggaattgcctatgagcagcaaaagagatcgatg
cgtgaaggcgtggatattattattgctactcccggccgcctgatttctcacctttcatca
ggagttttaaaattagatcaactgcaacatctggtattggatgaagcagacaggatgctt
gatatgggtttttacgacgatatcatgcgaatcgtaagctatcttcctgagaacaggcaa
accgtaatgttttctgcaaccatgcctccgaaaatcaggaaactggcaggatcactgcta
aaacatcctgaacaaattaacatctcaatatcgaaacctgccgaagggatatcacagcag
gtttatcttatacacgacgagcaaaaagttcctttactttcgtctattctaaaaactgat
gaatacaagagcattattgtttttgcatcaacaaaagaaaaagttaaaaatttaggtaag
gtttttagaaatcttggccttaaggccgaagcttttcattcggatcttggtcaaaaagaa
agagagggtattcttctaaaattcaaaaacagacaactgcctattattataggcacagat
gttttaagtcgtggtattgacgtggaaggtattgacctggtaattaactttgatgtgccc
catgatgctgaagattatgtacaccgtataggcagaactgcacgggctgctaccaaaggt
actgcaattacacttgttaataacagagacaagcgcaaacttgcaagtattgaaaagctg
attgagaaacaaattgaaagaatgcctttaccggaacacctgggtgaggctcctttagaa
acagctgccgatttatcagaaaaacctgtgcgccacaataaaccaaaacgtaaattctgg
aaaaagaagccggctaaaaacacaggatcatag
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