Pedobacter ginsengisoli: CPT03_20990
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Entry
CPT03_20990 CDS
T05145
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPT03_20990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_20990
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPT03_20990
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CPT03_20990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
DnaJ_CXXCXGXG
AAA_21
RsgA_GTPase
nSTAND3
Viral_helicase1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ATP58764
UniProt:
A0A2D1UB77
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All DBs
Position
4986542..4989385
Genome browser
AA seq
947 aa
AA seq
DB search
MSKNTIDLGEQKDVEVYGARVHNLKNIDVSFPRNKLVVITGLSGSGKSSLAFDTIYAEGQ
RRYMETFSAYSRQFMGGMERPDVDKVSGLSPVIAIEQKTTSKNPRSTVGTITEIYDFMRL
LYARAADAFSYNTGEKMERMSEDQILNNIFNKFGDMPVNILAPVVKGRKGHYRELFEQIR
KQGYVKVRIDGDIQDITPKMQVDRYKIHDIEIVVDRLVIDRKDIKRLQDSLQTAMRLGKG
IIKISDKANNVSHFSRFLMCPTTGISYDEPQPNSFSFNSPYGACENCDGLGYIFVIDRES
VIPNPKLSILNGGLAPLGEYREVWVFQVLKALAKKYNFSLSTPLEKLGEDNINIILNGTH
ELLSVAVEYNKWNVQNYQITFDGIIKLLEEQQERKGEGAVDDMESFRKLKTCPVCNGARL
KKESLNFKIDGKNIFELAEMDIISLKNWYVDVESRLSERQNIIAKEILKEIRARLGFLTD
VGLNYLSLDRTARTLSGGEAQRIRLATQIGSQLMNVMYILDEPSIGLHQRDNERLIGALK
NLRDLGNTVLVVEHDKDMILEADHVIDVGPAAGAHGGEIVAQGNPAQILKSDTLTAAYLN
GKKGIEIPAKRRKGNGHKLSIIKASGHNLKDVSVDFPLGKFIAVTGVSGSGKSSLITETL
YPILNHHFFRAKKHPLPYEKINGLKEIDKVIEIDQAPIGRTPRSNPSTYTGVFSDIRNLY
VQLPEAKIRGYKPGRFSFNVKGGRCETCQGGGMKVIEMNFLPDVQVPCEECGGKRYNRET
LEVRYRSKSISDVLDMSIEEACDFFENMPAIYRKIKTLKDVGLGYITLGQSSTTLSGGEA
QRVKLATELSKKDTGRTFYILDEPTTGLHFEDINVLLGVLNELVEKGNTVLVIEHNLDVV
KVADWIIDLGEEGGAGGGRIIFEGTPEGLIQNPISLTGKFLKKEMGL
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaataccatcgaccttggagagcaaaaagatgtagaagtgtatggggcaagg
gtgcataacctaaaaaatatagacgtttcctttcccagaaataagcttgttgtaattaca
ggtttaagcggaagtggtaaatcgtctcttgcttttgataccatttatgccgagggacag
cgcaggtatatggaaacttttagtgcctattcgcgtcagtttatgggcggaatggaaagg
cctgatgtagataaagtttcgggcttaagcccggttattgcaatagaacaaaaaacaacc
agtaaaaatccaagatcaaccgtaggaacaattaccgagatctacgattttatgcgctta
ctttatgcccgtgctgctgatgccttttcttacaacacaggtgagaaaatggagcgtatg
agcgaagaccagattcttaataatatatttaacaagtttggtgatatgccggtaaacata
ctggcacctgtagttaaaggccgtaaaggtcattatcgtgagctttttgagcaaattcgt
aaacaagggtatgtaaaagtgcgtattgatggtgatatacaggatatcacacctaaaatg
caggtagaccggtacaaaattcatgacattgaaattgttgttgatagacttgtaatagat
agaaaagacataaaacggcttcaagattcactccaaaccgcaatgcgtttaggtaaggga
attattaaaataagtgataaggcaaataatgtatcgcactttagccggtttttaatgtgc
cctacaacgggtatctcttacgacgagccgcagccaaacagtttttcttttaactcgcca
tacggagcttgcgagaactgcgatggcttgggttacatctttgtaatcgacagggagtca
gtaatcccgaatcctaaacttagtatccttaatggaggattggcccccttaggcgaatat
cgtgaagtatgggtatttcaggttttaaaagcacttgcaaaaaaatataacttttcactt
tcaaccccgctcgaaaaactgggagaggataatattaatatcattcttaatggtactcat
gaattattaagtgtagctgttgagtataataagtggaacgttcagaactatcagattacg
ttcgacggaattattaaactacttgaagagcaacaggagcgcaaaggcgaaggagccgtt
gatgatatggagagcttccgtaagcttaaaacctgtccggtatgtaatggcgctcgttta
aagaaagaaagcctgaattttaaaatagatggcaagaatatatttgaacttgccgagatg
gacatcatcagtcttaaaaactggtatgtagatgtagagagcagacttagtgagcgtcaa
aatattattgccaaagaaattcttaaagagatccgtgccagattgggcttccttaccgat
gttggtttaaattacctgtcactagatcgtactgcacgtactctttctggtggcgaggct
caaaggataaggctggctacccagatcgggtcgcagcttatgaacgtaatgtatattctg
gatgagccgagcattggtttacatcagcgcgacaatgaacgtttaataggagcccttaaa
aatcttagggatttaggtaatacggtgcttgttgttgaacacgataaggacatgatactg
gaagcagatcacgttattgatgtagggcctgctgcaggtgcccatggcggagaaattgta
gctcagggtaatccagctcagatcctaaaatcagataccttaaccgctgcatatcttaat
ggcaaaaaaggcatagaaatacctgccaaacgtagaaaagggaatgggcataaactttca
ataattaaagctagcggccataacttaaaggatgtttcggttgatttcccattaggcaag
tttattgccgttaccggagtttcgggcagtggtaaatcaagcttaattaccgaaacgctt
taccctatattgaatcatcatttctttagggccaaaaaacatccgcttccgtacgaaaag
atcaatggcttaaaagaaatagataaagtaattgaaatagatcaggcaccaattggccgt
acaccaaggtctaatccatctacttataccggtgtattttcagatatccggaacttatac
gtacagctgcccgaagcaaagataagaggctataagccagggcgcttctcctttaatgta
aagggaggccgctgcgaaacctgtcagggtggaggaatgaaggtaattgaaatgaatttc
ctgccggatgtacaggtgccttgtgaagagtgtggtggaaaaaggtataaccgggaaacc
ctggaggtacgttatagaagtaaatcgattagtgatgtgcttgacatgagtatagaagaa
gcgtgtgatttctttgaaaatatgcctgccatctatcgtaaaataaagacacttaaagat
gttgggcttgggtatatcaccttaggtcaatcatcaacaaccttatcgggtggagaagcg
cagcgcgtaaaactggctactgaactttctaaaaaggatacaggaagaactttttatatt
ctggatgaaccaactacaggtttgcattttgaagatataaatgtattgcttggggtatta
aatgaattggttgaaaaagggaatactgtgctggttattgagcataaccttgatgtggta
aaagttgctgattggattattgatcttggtgaagaaggcggtgcaggagggggcaggatt
atctttgaaggtacaccagagggtctaattcaaaatccaataagccttacaggtaagttt
ttgaaaaaagaaatgggactttaa
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