Pedobacter ginsengisoli: CPT03_21525
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Entry
CPT03_21525 CDS
T05145
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPT03_21525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgs03019
]
CPT03_21525
03009 Ribosome biogenesis [BR:
pgs03009
]
CPT03_21525
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPT03_21525
Messenger RNA biogenesis [BR:
pgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPT03_21525
Ribosome biogenesis [BR:
pgs03009
]
Prokaryotic type
rRNA helicases
CPT03_21525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ATP59346
UniProt:
A0A2D1UCL8
LinkDB
All DBs
Position
complement(5094731..5096566)
Genome browser
AA seq
611 aa
AA seq
DB search
MNPFSKLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLP
LLELIDFKSNKPQALILCPTRELCLQITSDIKNFSKNISGANVVAVYGGANIMQQLREIR
NGVQIVVATPGRMLDIIGRKAIDFSNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT
WLFSATMPPEVRRIARNYMDQPVELTMGTKNTGNVNIEHEYYTVRARDKYAALKRIVDFN
PEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLIATD
VAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGVSICIVNSKELGKIRQIERI
IGKQFTKAELPTGFDVCEKQLFALVHKVHNVEVNENQIEQYMPRIMDEFAELSKDEVIKR
FASLEFNRFLEYYKNAPDLNSSDERGERGERGERNHRGSEGYTRLFINLGSVDDFTRGDL
LSFVCNNGKISGKGIGKIDLKGVYSFFEVENASVESLFSNFKGVEFNNRGVRIERTADSD
GGGRSRGGRREGGSYGGGRRDGGERRSYGGGGRREGGNSGGGGFRDFSGRGREDRGGSGR
RDGGNDRKRRS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
ataaacccatttagtaaattggggataagtgatgacgttgttaatgctgtaaaggattta
ggtttcgaaaatccaacacctattcaggaacaaagtattcctgtgctgttagagggcaat
aacgattttgttggtttggcccaaacaggaacaggaaaaacagccgcatttggtttgccg
ctgttagaattgatagactttaaaagcaataagcctcaggcattgattttatgccctaca
agagagctttgcttgcagattaccagcgacatcaagaatttctcaaaaaacatctctggt
gctaatgtagttgccgtttacggtggcgcaaacattatgcaacagttgcgtgaaattaga
aacggtgtacaaattgtagtggctacaccaggtcgtatgttagacattattggccgtaag
gctatagatttcagtaatgtgaaatatgtagttttagatgaagctgatgaaatgttaaac
atgggcttccaggaagacataaacgacatcttgtcaacaactcctgatgacaaaaaaaca
tggctattctcggcaactatgccaccagaggtaagaagaatagctagaaattacatggat
cagccggttgagctaaccatgggaacaaaaaatacaggtaatgtaaacatcgaacacgaa
tactataccgttcgtgcaagagataaatatgcggctttaaagcgtattgtagattttaac
cctgagatttttgcagtagtattctgtaaaactaaacttgacactcaagatgttgctgaa
cacttaattaaagatggctacaatgctgatgcattgcacggagatctttcgcagcaacaa
cgtgataaagttatgcaacgtttccgtgatcgtaacatgcagttgcttattgctactgat
gttgcagcacgtggtatcgacgtaaataacgttactcacgtaatcaattactctttacca
gacgaaattgaaagttatacccaccgcagtggccgtaccggtcgtgcaggtaaaaccggt
gtgtcaatctgtattgttaactctaaagagcttggcaaaatccgtcaaattgaaagaatc
attggcaaacagtttactaaagctgaattacctactggttttgatgtttgcgaaaaacaa
ttatttgccctggtacacaaagttcacaatgttgaagtaaacgaaaatcaaatcgagcaa
tacatgcctcgcattatggatgagtttgctgaattaagtaaagacgaggtaattaaacgt
tttgcttctttagagtttaaccgctttttagagtattacaaaaatgcccctgaccttaac
tcatctgatgaaagaggagaacgtggtgagcgtggagagagaaaccacagaggaagcgaa
ggttatactcgtttatttataaaccttggatcagttgatgatttcaccagaggagattta
ttatcttttgtatgcaacaacggtaaaataagcggtaaaggtattggtaaaatagactta
aaaggtgtttattcattctttgaagttgaaaatgcaagtgttgaatctttatttagcaac
tttaaaggagttgaattcaataaccgtggtgtaagaatcgaaagaactgccgacagtgat
ggtggaggccgtagtcgtggtggaagacgtgaaggtggtagttacggaggcggaagacgc
gatggtggcgaaagaagaagctatggcggcggtggaagacgtgaaggcggaaacagtggc
ggtggcggtttcagagatttctctggaagaggccgtgaagatagaggtggaagtggcaga
cgcgatggcggaaacgatagaaaacgcagatcttaa
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