Pedobacter ginsengisoli: CPT03_22000
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Entry
CPT03_22000 CDS
T05145
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs00550
Peptidoglycan biosynthesis
pgs01100
Metabolic pathways
pgs01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CPT03_22000 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
CPT03_22000 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgs01011
]
CPT03_22000 (mrdA)
Enzymes [BR:
pgs01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
CPT03_22000 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
pgs01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
CPT03_22000 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ATP58950
UniProt:
A0A2D1UBF4
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All DBs
Position
complement(5190034..5191980)
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AA seq
648 aa
AA seq
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MDNLFNRKYIVQGLFIVVSLILLGTLFYIQVFSDKYFLSAESNVLRKLYTFPARGVILDR
NEKILVQNEPVYDLMVIPNDVKEFDTLALCEIIGIDTVKFRKNFKKALNLSRFQPSIFEK
QLPVSIYQSLSEKLYRFPGFFVQSRTIRQYPDSIAGHFLGYIKEVSPTDIERSEGYYRMG
DYIGKTGVEKSYETALRGERGVVNMLYDVHNVPKGSYAEGKFDTMAVSGEQLVSSLDIRI
QKLGEELLKNKVGSIVAIEPATGEILAFVSSPGYDPNLMVGRQQGNNYMDLLKNPNRVFN
IRPIQGYYSPGSSFKPLDALIGLQEGVIDENTTFNCPGYFRVGNHTTKCEHVDGNIALRR
GLARSCNTYACYVFEKLLTQKKFKKQKIAAYEYWQKKVKLWGLGDTLGIDLPGERRGRLY
DASYYTKKYGKYWGYSTVISLAIGQGEMDATPLQMANIMAAIANKGYYIKPHLVKSIGKD
HLIRKEYVRKNYVGVDAAHFVPVIDGMQEAVNSPWGTAVASKIDGIIMCGKTGTVQNPRG
KNHSVFIGFAPRDNPKIAIAVIVENAGYGGTYAAPIASFITEKYLKDSIPPYRRERVEWM
KNQVILPAPPKSKVKPKAAVIDSAKKADSLKKIIPAIEPKKITDKKHD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggataatctgtttaaccggaaatacattgtacaaggattattcattgttgtttcacta
atacttttaggtactcttttttatatacaggtatttagcgacaagtactttctttcggca
gagagtaatgtgctgcgtaagctatacacttttcctgcccggggggtaattttagacagg
aatgaaaagattttagtgcagaatgaaccagtgtacgatttaatggttataccgaatgac
gtaaaagaatttgacactctggctctttgtgaaattattggtattgacaccgtcaaattc
cgaaaaaactttaaaaaagctttaaacctgtccagattccagccaagcatatttgaaaaa
caacttcccgttagtatttatcagtctctatccgaaaaactatatcgattccctggtttt
tttgtacaaagcagaactataagacaatatccggatagcatagctggtcactttttaggg
tatataaaagaagtaagcccaacggatattgaaagatctgaaggttattacagaatgggt
gactatattggaaaaaccggtgtagaaaaatcttacgagactgccctaaggggtgaaaga
ggtgttgtaaatatgctttacgacgttcataatgtacccaaaggcagttatgctgaagga
aaatttgataccatggcagtatcgggagagcaattggtatcatcccttgatattaggata
cagaaattaggtgaagaactgctcaaaaacaaagttgggagtatagttgcaattgaacct
gccacaggagaaattctggcctttgttagtagccccggttatgaccctaacttaatggtt
ggccgccagcagggtaataattatatggatttactaaaaaatcctaaccgtgtgtttaac
attcgcccaatacagggttattactcaccaggatcttcttttaagcctctggatgcttta
attggcctacaggagggagttatagacgaaaacaccacatttaattgtcctggttacttt
cgtgttggcaatcatactactaaatgtgagcacgtggacgggaatatcgctttaagaaga
ggtcttgccagatcatgtaatacttatgcatgttatgtgtttgagaaattactaacccaa
aaaaagtttaaaaaacaaaaaatagcagcatacgagtattggcaaaagaaagtaaaattg
tggggccttggagatacgcttggcattgatttgccgggagaacgtagaggccgactttac
gatgcttcttattacacaaaaaaatatggcaaatattggggctattcaactgtaatttca
ttagctattgggcagggcgagatggatgccacacctttacaaatggcaaatattatggcg
gcaattgccaacaaaggttattacataaaacctcacttggttaaatcaataggaaaagac
catttgattagaaaagaatatgttaggaaaaactatgtgggtgtagatgcagcacatttt
gtacctgtaattgatggaatgcaggaagctgtaaattcgccatggggtactgctgtagct
tcgaaaattgatggaattattatgtgcggaaaaacaggtacggtacaaaatccacgagga
aaaaaccactctgtatttattggctttgctccgcgggataatccaaaaattgccattgcg
gttattgttgaaaatgctggttatggaggtacatacgctgcaccaattgcaagttttatt
acagagaaataccttaaagatagtatccccccttacaggagggaaagagtggaatggatg
aaaaatcaggtaattcttccggcaccaccaaagtcgaaagtaaaacctaaagcagcggtt
attgattcagccaaaaaagcagactctctcaaaaaaatcattccagctattgagcctaag
aaaataacagataaaaaacatgattaa
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