Pedobacter ginsengisoli: CPT03_22210
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Entry
CPT03_22210 CDS
T05145
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPT03_22210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgs03021
]
CPT03_22210 (rpoC)
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_22210 (rpoC)
Enzymes [BR:
pgs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPT03_22210 (rpoC)
Transcription machinery [BR:
pgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPT03_22210 (rpoC)
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPT03_22210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATP58986
UniProt:
A0A2D1UBK4
LinkDB
All DBs
Position
5228722..5233008
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLASPEAILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQPGLMAEEGIQYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFVAKMGAEALEDLLKRIDLDTLSYNLRHQAANETSQQRKNEALKRLQVVEAFRGS
RSRIENNPEWMIIKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGIVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGHAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDEKRVVK
GQDSVFYSPEEVIIAYNEKRIDLHAFIKVKVNVKIEDGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKITGMARASRFLDDIKELGFQMAFRGGLSFNLQDVNIP
VEKHTLLEQASAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTSFVMNQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNSEDCGTLRGMYTTALKDNEDIVE
PLFDRVLGRISLHDVFNPLDGSLLVAAGQDIDEDIAKAIEESPLEGIEIRSVLTCENQRG
VCALCYGRNLATGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQITAK
FDGVIEFENVRTVENDTEEGVKQIVLGRSGEFKIVEPETNKIIMTSNIPYGAFLYVEDGA
KIAKGDRICSWDPYNAVIISEFAGKIEFEAIIEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVKVVDKKGELIRGYNIPVGAHIAIDEGDTVKTGQILVKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMTIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTSFLENNSVDRWDFMIENDEIYDKKVVVDAGDSNTVKPGQILSLRKLRDENS
QLKRKDLKQVEVRDARPATASSVLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
SMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEIEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatcgataaccattagtttg
gcatcgcctgaggctattttagagcgctcaagtggtgaggtgttgaaacctgagaccatc
aattatcgtacttacaaacctgaacgtgatggtttgttttgcgaacgtatttttggtccc
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataagggtattgtt
tgtgatcgttgtggtgttgaggtaactgaaaagaaagtgcgtagagagcgtatgggacat
atcaatctggtagttcctgttgcgcatatctggtatttccgttcattaccaaataaaatc
ggttacttattaggtttgcctactaaaagattagatctgatcatttactacgaacgttat
gtagtaattcaaccaggtttaatggctgaggaaggtattcagtatatggatttccttact
gaggaagaatatttagatattcttgataaattacctaaagagaaccaatacctggatgat
aaagatcctaataaattcgtagccaaaatgggtgctgaagcattagaggatttattaaaa
cgtattgatttagatacattatcatataacttacgtcaccaggctgctaatgaaacttct
caacaacgtaaaaacgaagcattaaaacgtttacaggttgttgaagcattccgtggctca
agatcacgtattgagaataatccagagtggatgatcattaagatcgttccggttattcca
ccagaattgcgtccattagtacctcttgaaggcggtcgtttcgcgacttctgatttaaat
gatctttatcgtcgtgttattatccgtaacaatcgtttgaaacgtttgatcgagatcaaa
gctccggaagtaattttacgtaacgaaaagcgtatgttacaggaagctgttgattcgtta
tttgataactcacgtaaggtaaacgctgtaaaaactgaaggtaatcgtgctttaaaatct
ctttcagatatcctgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaacgt
gtggattattctgctcgttctgtaattgttgtagggcctaaccttaaattacatgaatgt
ggtttacctaaagatatggctgctgagctattcaaaccatttatcatccgtaagatgata
gaaagaggtatcgttaaaacagtaaaatctgctaagaaaattgtagacagaaaagatcca
ctagtttgggatattcttgaaaatgttttaaaaggacatcctgtattactgaatcgtgcg
cctacattgcacagattgggtatacaatctttccaacctaagttggttgaaggtaaagca
attcaattacacccgttagtttgtactgcatttaacgcggattttgacggtgaccagatg
gcagtacatttaccattagggcacgccgcaatattagaagcacaagtattaatgcttgct
gcacacaacattctaaaccctgcaaatggtactcctattactgtaccttctcaggatatg
gttttgggtctttattatattactaaaggccgtagaactgacgaaaaacgtgtagttaaa
ggacaagattcagtattctattctcctgaagaagtaatcattgcttacaatgagaaaaga
attgatcttcacgcatttattaaagttaaagtaaatgttaaaattgaagatggatctata
gttaataaattaacagaaacaactgttggacgtgtactatttaatcaaatggttcctgaa
gaagttggttatatcaatgaattattaactaaaaaatctttaagagatattatcggtgag
gttgttaaaattaccggtatggctcgtgcatcaagattccttgatgacattaaagaatta
ggtttccaaatggcattcagaggaggtttatcgtttaacttgcaagacgtaaacattccg
gttgaaaaacatactttattagaacaggcttctgcagaggttgaggaggtaaggaataac
tataacatgggattcattaccaacaatgagcgttacaaccaaattatcgatatctggact
cgtatcaataaccgtttaacatcattcgtgatgaatcagttatcgagcgataaccaagga
tttaactcagtatatatgatgttggattctggtgcccgtggttcgaaagagcagatccgt
cagttatgcggtatgcgtggtttgatggcgaaacctcaaaaatcaggttctggtggtgag
attatcgaaaacccgatcttatctaactttaaagaaggattatcggtattagaatacttt
atctctactcacggtgctcgtaaaggtttggcggatacggcattaaaaactgccgatgct
ggttacttaacacgtcgtttacatgatgttgcacaggatatgatcgttaattctgaagat
tgcggtacattgagaggtatgtatactacagcattgaaagataatgaggatatcgttgag
ccattattcgatagagttttaggccgtatctcactacatgatgtattcaatccattagat
ggatcattattagtggcagccggacaagatattgatgaagatattgctaaagcaattgag
gaatctccacttgaaggtattgaaattcgttctgtattaacttgcgaaaatcaaagaggt
gtttgtgccctttgttatggacgtaacttagcaactggtaaacgtgttcaaaaaggcgag
gctgtaggtgtaattgctgcacagtcaatcggtgagccgggtacacagttaacactacgt
acattccacgtgggtggtactgcatctaacattgctgcagaatcacagatcactgctaaa
tttgatggtgttattgaatttgaaaacgttcgtacagttgaaaacgatacggaagaaggc
gtaaaacaaattgttttaggtcgttcaggagagtttaaaattgttgagccggaaacaaac
aaaatcatcatgaccagcaatatcccttacggtgcattcttgtacgttgaggatggagcg
aaaatagctaaaggagacagaatttgttcatgggatccttacaacgctgtaattatctct
gaatttgcaggtaaaattgaatttgaggcgatcattgagggagttaccttccgtgaagaa
tcagatgagcagactggtcaccgtgaaaaagtaattattgatacacgtgataaaactaag
aatccttcggttaaagttgttgacaaaaaaggtgaactgatcagaggatataacatccct
gtaggtgcccacattgcaatcgatgaaggagatacagttaaaactggtcagattttagtt
aaaatacctcgtgcaactggaaaaacaagggatattacaggtggtttaccacgtgtaacc
gagttgttcgaagcacgtaatccatctaaccctgctgtagtaacagagattgatggtgtg
gtaactttaggtggtgtgaaacgtggtaatcgtgagatgactatcgaatctaaagatggt
gaggttaaaaaataccttgttccattgtctaaacacatccttgtacaggataatgacttt
gtgaaagctggtatgccattatctgatggttctatttcacctgctgatatccttgcaatt
aaaggccctgcggctgtacaagaatatcttgttaatggtatccaggaggtttatcgttta
caaggtgtgaaaatcaatgataaacactttgaggttattgtacaccaaatgatgcagaaa
gtacatatcgaagatcctggggataccagtttcttagaaaataactctgtagatcgttgg
gactttatgattgagaatgatgagatctacgacaaaaaagttgtagtagatgctggtgat
tcaaatacagttaaacctggtcagattctttcattacgtaaattaagagacgaaaattct
caattgaaacgtaaagatttgaaacaagttgaagttcgtgatgcaagacctgcaacagct
agttcagtactgcaaggtattacccgtgcatcactaggtacaaaatcatttatctcagca
gcatcgttccaggaaactactaaagtattaaatgaagcagctattgctggtaaacgcgat
agtatgttaggattgaaagaaaacgtaattgttggacacttaattccttctggtactggt
gtacgtggatatgagcgtatcattgttggatctcaagaagaatacgataaattattagct
tctaaacaagaagaaatagaagcctaa
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