KEGG   Pedobacter ginsengisoli: CPT03_22570
Entry
CPT03_22570       CDS       T05145                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_22570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_22570
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_22570
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE HTH_23 HTH_20 Sigma70_ECF HTH_38 FNIP_C HTH_3 HTH_40 HTH_24 HTH_10 HTH_28 SWIRM
Other DBs
NCBI-ProteinID: ATP59048
UniProt: A0A2D1UBP6
LinkDB
Position
5313166..5313759
AA seq 197 aa
MTTYSLLSDQELRTKLVFGDEYAFAEFYERYSAGILGFVKKFVHSADLSEDLTQEIFIKI
WQCRSKLADVQSLKAYLYIVARNHTLNSLKKAFRSEVAMSEVVNSFVEERNCTEDELLSK
EYYDYLHNALAQLSPRSREIFKLCREQGKSYDEVATALGISRNAVKNHMVASMKILRTAV
EKDLGISLGVILVMLLK
NT seq 594 nt   +upstreamnt  +downstreamnt
atgaccacatattctctactttctgatcaggaactcaggactaaattagtctttggagac
gagtatgcttttgcagaattctatgagaggtatagtgccgggattttgggttttgttaaa
aagtttgttcattctgccgacctttcggaagatcttactcaggaaatattcataaaaatc
tggcaatgcaggtcaaagctggcagatgttcaatcattaaaagcttacctatatatagtt
gcccgtaaccatactttaaatagtcttaaaaaagcctttcgttctgaagttgctatgtcg
gaggtagtaaacagctttgttgaagagcgaaattgtacagaagatgaacttttgagtaaa
gagtattacgattatctgcataatgccttagcacaactgtcgccacgcagtagagaaatt
tttaaactgtgcagagagcagggtaaaagttatgatgaagtggcaacggcacttggcatt
tcccgaaatgccgtaaaaaaccatatggttgcttctatgaaaattcttagaacggcggtc
gaaaaggacctaggtatttctttaggggtgattttggttatgctcttaaaataa

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