Pedobacter ginsengisoli: CPT03_22570
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Entry
CPT03_22570 CDS
T05145
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPT03_22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgs03021
]
CPT03_22570
Transcription machinery [BR:
pgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPT03_22570
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_23
HTH_20
Sigma70_ECF
HTH_38
FNIP_C
HTH_3
HTH_40
HTH_24
HTH_10
HTH_28
SWIRM
Motif
Other DBs
NCBI-ProteinID:
ATP59048
UniProt:
A0A2D1UBP6
LinkDB
All DBs
Position
5313166..5313759
Genome browser
AA seq
197 aa
AA seq
DB search
MTTYSLLSDQELRTKLVFGDEYAFAEFYERYSAGILGFVKKFVHSADLSEDLTQEIFIKI
WQCRSKLADVQSLKAYLYIVARNHTLNSLKKAFRSEVAMSEVVNSFVEERNCTEDELLSK
EYYDYLHNALAQLSPRSREIFKLCREQGKSYDEVATALGISRNAVKNHMVASMKILRTAV
EKDLGISLGVILVMLLK
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatattctctactttctgatcaggaactcaggactaaattagtctttggagac
gagtatgcttttgcagaattctatgagaggtatagtgccgggattttgggttttgttaaa
aagtttgttcattctgccgacctttcggaagatcttactcaggaaatattcataaaaatc
tggcaatgcaggtcaaagctggcagatgttcaatcattaaaagcttacctatatatagtt
gcccgtaaccatactttaaatagtcttaaaaaagcctttcgttctgaagttgctatgtcg
gaggtagtaaacagctttgttgaagagcgaaattgtacagaagatgaacttttgagtaaa
gagtattacgattatctgcataatgccttagcacaactgtcgccacgcagtagagaaatt
tttaaactgtgcagagagcagggtaaaagttatgatgaagtggcaacggcacttggcatt
tcccgaaatgccgtaaaaaaccatatggttgcttctatgaaaattcttagaacggcggtc
gaaaaggacctaggtatttctttaggggtgattttggttatgctcttaaaataa
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integrated database retrieval system