Porphyromonas gingivalis TDC60: PGTDC60_0035
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Entry
PGTDC60_0035 CDS
T01516
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03030
DNA replication
pgt03430
Mismatch repair
pgt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGTDC60_0035 (dnaE)
03430 Mismatch repair
PGTDC60_0035 (dnaE)
03440 Homologous recombination
PGTDC60_0035 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_0035 (dnaE)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0035 (dnaE)
Enzymes [BR:
pgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PGTDC60_0035 (dnaE)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PGTDC60_0035 (dnaE)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PGTDC60_0035 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAK24205
LinkDB
All DBs
Position
complement(39890..43576)
Genome browser
AA seq
1228 aa
AA seq
DB search
MEPFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNS
GHNATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCAR
RTRFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRPRIDK
ELLQKYHEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNP
LGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDP
NRMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPEYKD
DDDYLRFLTYEGARRKYGEDLSDEIKERIDFELETIKGMGFPGYFLIVQDFIAAARSMGV
SVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDDDGRAEILR
WVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKIPGEKKVNLK
KAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDISDVVPVSTA
PDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGIDLNIDTIPL
DDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPMDYIPSFIA
RKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRKAMGKKLIE
KMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANY
PAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGDIRFGLSAV
KGVGSGAVEQIIAEREANGLYKDIFDFVERISLSACNRKTMESLALAGAFDSFALSREEY
MAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTEPWNDLERL
NKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVTKAFQGISR
SNNPYSKITLEDLSGTGEIPLFGQAHVNFGNYCKEGLYLLIRASVQPHKWKEGEMELVVT
SIELLPQVADTLIKKMTILLPASKIDNELIEMLSDELTNNSGKTMLFIKVYDHTETFDVE
LAQQKSLIKVSPELVNRLKTYEINFALE
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggaacccttcgtacacctgcacgtacactcccaattctctctgcttgacggacaggcc
gctatcaatgatttggtggacaaagccattgccgacggtatgccgggtattgctctgacc
gatcatggagccatgttcggcatcaaggagttttacaactatgtggagaagaagaacagc
gggcacaatgcgacattgaaggactgtaggcgcgaactggatcaactgaacgactcgaag
agtgccgacatgctaaccgatgaagagcgcaaccgcattgtcaagttgcagcagaagata
gaggaaaccaaaaaactcctcttcaaacctatccttgggtgtgaggcatattgtgcccga
cgtacgcgattcgacaaggataaccagataccggatccgtatcatcccagacgctccatc
gatgccagcggttggcacttgatcctgctggcaaaaaacttgcgagggtacaagaatctg
atcaaaatggtcagctattcatggacagaaggacagtactaccgtccgcgtatcgacaag
gagcttttgcagaagtatcatgaaggtatcattgtctcttcggcctgcctgggaggagag
ataccacagcatatcatggcaggagagattgccaaggctgaggaggccatcctctggttc
aaagagctttttggagacgattactatttggagattcagcgacacgagacgcataatcca
ctcggcaatcaggatgttttcccccagcaacagcgcgtaaatcgcgtcatactggagctt
ggcaagaagttgggcgtcaaagttattgcgacgaacgatgtccatttctgcaatgaagaa
gatgctgaggcgcacgaccgtctgatctgtctgagcacagggaaggatctggacgatccg
aacaggatgcgctataccaagcaggaatggatgaagactacggcagagatgagcgccata
ttcgaggatctacctgagactctttccaacacattagaaatacttgacaaggtagagttc
tacagcatcgacaacaaagccctgatgccggactttcctatcccccccgaatataaagac
gatgatgactacctgcgtttccttacctacgaaggggccaggcgcaagtatggagaggat
ctttccgatgagataaaagagcgtatcgactttgaactggaaaccatcaaaggaatgggg
ttccccggctacttccttattgtacaggatttcattgcagccgcacgaagtatgggcgtc
tctgtcggacccggccgaggatcggcagccggttcggcggtagcttactgtttggggatc
acggatatcgatccgatcaagtaccatttgcttttcgagcgttttctcaatccggatcgt
atctccatgcccgatatagacgtcgacttcgatgatgacgggcgtgccgaaatactccgc
tgggtgacggaaaaatacggcaaggagagagtggcccacatcatcacctacggtacgatg
gccacaaagagttctattaaggatgtggctcgcgtacagaggctgcccttacccgaaagc
aatcgtttagccaagctcgtaccggacaaaattcccggagagaagaaagtcaatctgaag
aaagcaatcgaatttgttccagagctgaagcaagcatcgctaagctccgataaggtaatg
cgcgataccctgaaatacgcccaaatgctggaggggaatgtgcgcaatacaggtgtgcat
gcctgcggtatcatcattggaaaaacggatatcagcgatgtcgttccggtcagtacggct
cccgacaaagacacgaaggaggagctgctggtcacacaatacgaaggctctgtcatcgaa
cagacgggactgatcaaaatggacttcctcgggctgaaaacgctctcgatcatcaaagaa
gctttggtcaacataaagcggcgccatggcattgacttgaatatagacacgatccctctc
gacgatcctcttacatataagctatacagcgatggacgtaccataggtactttccaattc
gaatccggtgggatgcaaaagtatcttagggagctacagccctctgctttcgaggacttg
atagcgatgaatgctctctatcgtcccggtccgatggactatatcccttcttttatcgca
cgcaagcatgggcgtgagcctatcgattacgacctgcctgagatggaagaatatctcaaa
gaaacttatggtgtgacggtgtatcaggagcaagtcatgcttctgagtcgcaagcttgcc
ggtttcacccgaggccagagcgatgagcttcgtaaggctatgggcaaaaaactcatcgaa
aagatgaatgttctgaaggtgaagtttctcgagggggggaataagaatggacatccggaa
gaagttctggaaaagatctggacagactgggagaagttcgccagctatgctttcaacaag
agtcatgccacctgctacagttgggtagcctaccaaacggcttacctgaaagcaaactat
cctgctgaatatatggcaggagcattgagccgaaacctgaataacatcacggaaataacc
aagctcatggatgagtgcaagtccatgaagatcggcgtattggtaccggatgtgaacgag
tccgaaatgaaattctcagtaaatgccaatggggatattcgctttggtctcagcgcagta
aagggtgtaggatcgggagccgtggagcagatcattgccgaacgcgaagccaacgggcta
tataaggacatcttcgactttgtggagcggatcagtctctctgcctgcaatcgcaagacg
atggagagtctggccttggccggtgctttcgacagcttcgctctatcccgggaggaatat
atggctcctcctctgacaggaagagaggagtcatacatacaagcacttatgcgctatggg
tccgtagtacaagaggagaagcacagccagagcaattccctcttcggagaggaagaagat
ctgatgattcctcgtccgcagccatctcccaccgagccatggaacgacttggaaaggctc
aataaagaacgtgaactcgtagggctctaccttagttccaatccaatggctcagtaccaa
gtcattctcgatcactattgcaatacccatgcagccgatttgactgatccggattccttg
gtcgggaaaaatttggttttggccggtattgttaccaaggcttttcagggaatctctcgc
tcgaataatccgtactcaaagattacgttagaggatctgtccggcacaggcgaaatacct
cttttcggacaggctcatgtaaacttcggcaattattgcaaggaggggctgtatctcctc
attcgcgcatccgttcagcctcataagtggaaagagggtgaaatggaattggtcgtgacc
tcaatcgaactgctacctcaagtggccgatacattgatcaaaaagatgacgatcctactg
ccggcatcgaaaatcgacaatgagctgatcgaaatgctgtctgacgaattgacaaacaat
tcggggaaaacgatgttatttatcaaagtgtatgaccatacggagactttcgatgtcgag
ctggcacagcagaaatcgctgatcaaagtgtcccccgaactggtgaatagattgaagact
tatgagattaactttgcacttgaatag
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