Porphyromonas gingivalis TDC60: PGTDC60_0100
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Entry
PGTDC60_0100 CDS
T01516
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03030
DNA replication
pgt03410
Base excision repair
pgt03420
Nucleotide excision repair
pgt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGTDC60_0100 (polA)
03410 Base excision repair
PGTDC60_0100 (polA)
03420 Nucleotide excision repair
PGTDC60_0100 (polA)
03440 Homologous recombination
PGTDC60_0100 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_0100 (polA)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0100 (polA)
Enzymes [BR:
pgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PGTDC60_0100 (polA)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PGTDC60_0100 (polA)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PGTDC60_0100 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGTDC60_0100 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BAK24270
LinkDB
All DBs
Position
complement(115474..118254)
Genome browser
AA seq
926 aa
AA seq
DB search
MTERLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPEHIAVVF
DPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEILAAFRIPAVEVPDFEADDTIGTLA
KQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKLGGGYETWGPAEVCEKFGLSIPGQMID
YLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKKIQEGEEQTRF
SRYLATIRTDAPIVFDSEAYRRTSPDVAAVRECFAALEFRTLLKRLESTPTDAPATDLFA
GMIQAQEPPTDLFGEGTDATGLPLKKLTDVPHEYTILETEEEIADCIRIFSATPCFSFDT
ETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTAIGKVGQNMK
YDIQVLSRYGIEVRGQLFDTMIAHYLLFPDLRHNMDEMAETLLGYCTIHYSDLVGSDKQE
VHIRQVPLQNLADYAMEDADITWQLYERLDAMLSEAGMTSLFESIEMPLVPVLADMERSG
VKLDTEVLRRTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTK
SGSYSTNEEILVKLQEKHPIVRLILDYRGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVA
TTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESL
IQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTE
AKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNA
INAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLCPEAAEVRELVRSC
MEGVMPSLRVPLIAEIGEGANWLEAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcgacttttccttcttgatgcttatgctctcatctttcgtgcctattatgct
ttcatccgtagtccgcggatcgactctaccggtcgtgacaccggagctgtattcggcttt
gccctgaccttattggatatactggagaaggagtcgccggagcatatcgccgtggtattc
gatcctccgggaggtagttttcgtcatcgcgagtatgcagagtacaaggctcaacgagag
gaaacgccggaaggtattcgcatcgccgttccgttgattaaagagatattggcagctttc
cgtattcctgctgtagaagtgccggactttgaagcagacgacacgataggtactttggcc
aaacaagccgaagagcaagggcttgccgtcagaatggtaacgcccgataaggatttcggc
caactggtgtcggagcgaatcaagatctatcgacctaagttgggtggtggctatgaaaca
tgggggccggcagaagtctgcgaaaagttcggactttccatccccgggcaaatgatagat
tacctcggcctcgtaggagacagctcggacaatatacccggatgtaaaggcattggagcg
aaaacagctgagaagctactggctgagtatggaagcatagacggcatatacgcccaccaa
gatgaattgaaaggagctgtagccaagaaaattcaggagggggaagagcaaacgcgcttc
tcgcgctacttggccaccatccgcacggatgctcctattgtcttcgattccgaagcctat
cgacgtacttcgcccgatgtggcagccgttcgtgaatgcttcgctgcactggaatttcgc
actttgctgaaacggttggagagtacacctaccgatgcccctgcgacagacctgtttgcc
ggcatgatacaggcacaagagcctccgacagatttgttcggagaaggcaccgatgctaca
ggacttccgctaaagaaattgacagacgtaccacacgaatatacgattctcgaaaccgag
gaagagatagcggattgcatccgaatattctctgccacgccttgtttctcattcgacaca
gagaccgactcgaaagatgcacttcgggccaatatcgttgccatcacgctatgtgccgag
tcgggacgggctttcttcataccgctgccggaagacgaagaaatcggaaaacgcagatta
gatctcttgcgtccgctttttgccgatacagctatcggcaaagtcggtcagaatatgaag
tatgacatccaagtactctcccgatatggtatagaagtacgcggacagctattcgatacg
atgatagcacactacctcctctttcccgatctccgccacaatatggatgagatggcggag
acgttgctgggctattgcaccatccactactcggatcttgtcggaagcgacaaacaggag
gtgcacatccgtcaggtaccattgcagaatctggcagactatgccatggaagacgccgat
attacttggcagctatatgaacgcctcgatgctatgctctccgaggccgggatgacctcc
ttattcgaaagtatagagatgccactcgtgccggtgcttgccgatatggagcgctccggc
gtaaagctggacacggaggtgctccgacgcacagcttccggacttggcgaagagatgcag
cgaatcgaagatgaaatctaccgtttggccggacactcattcaatatcaacagtccctct
caagtgggaaccgtgctcttcgaggaactgcaaattaccgaaaagcccaaaaagacgaag
tccggcagctactctacaaacgaagaaattctggtcaagctacaggaaaagcatcccatc
gtgcgtctcatactggactatagaggaatcaaaaaactactcagtacctatgtagaagct
ctgccggagatgcgctaccccgatggtaagctgcatacctcgttcaatcagaccgtcgct
accacgggacgtctctccagcagcaatcctaatctgcaaaacattccgatccggaccgaa
gtcgggagggggctgagggctgctttcgtaccggacaatgacgaatgtattttcatgagc
gcagactattctcagatcgagctgcggctgatggcgcatctgagtgaagacgagagcttg
atacaggctttcctccatggagaagacatccaccgagccacagcctccaaaatatacagg
ctgcctcttgtagaagttacggatgacatgcgccgccgagctaaaacggccaacttcggg
atcatctacggcatctctgctttcgggcttagcgaacggctcaatatctcccgtacagaa
gccaaggccttgatcgaaggttactttgcctcttacccgggggttaaagcgtatatggat
cggagtattgccgaagccaagcgacagggctacgtcaccacactgttcggtcgcaagcga
ttcctccgggacataaacagtgccaatgccgtcgtccgcggctatgcagagcggaatgcc
atcaatgcccctatacaaggctctgctgccgacctgatcaagctggcgatgatcagaata
cacgaggaaatcactgagcgtaagctgcggagccgaatgatcctgcaagtgcacgacgaa
ctcaacttcaacgttctttgtcctgaagctgcagaagttcgcgagcttgtacgctcgtgt
atggagggggtgatgccctctttgcgtgttcctctgatagccgagatcggcgaaggagcc
aattggctggaggcgcactga
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