Porphyromonas gingivalis TDC60: PGTDC60_0181
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Entry
PGTDC60_0181 CDS
T01516
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PGTDC60_0181 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgt03021
]
PGTDC60_0181 (rpoA)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0181 (rpoA)
Enzymes [BR:
pgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PGTDC60_0181 (rpoA)
Transcription machinery [BR:
pgt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PGTDC60_0181 (rpoA)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PGTDC60_0181 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_5
Glyco_hydro_81
DUF4249
SAM_EPH
DUF3281
Motif
Other DBs
NCBI-ProteinID:
BAK24351
LinkDB
All DBs
Position
complement(201995..202987)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIE
GVEHEFATIPGVLEDVTNIILNLKQVRFKQIVPNADVEKATIVISNSEVFRAGDLNAQLS
NFEVLNSNLVICHLDKSATLTMEFSINKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNV
KYAVENFRVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFAENKIAIEYVDI
VDTDEFDEDSLHMRQLLKSKLSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFG
KKSLTELDELLVTLNLSFGMDISKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaatattagcatttcagaaacccgaaaatgtattgatgatggagacgtcggactcg
atcgccaagttcgagttcaaacctttggagcccggttatggtattaccattggcaatgcg
cttcgtcgaatactcttgtcttcgcttgaaggttttgcgattactgcaatcaagattgaa
ggtgtagagcatgaatttgctactattccgggtgtattggaggacgttactaatattatc
ctcaatctcaaacaagttcgttttaagcagattgttcctaatgccgatgtagaaaaggca
acaattgttatctctaattcggaggtgttccgtgccggtgatttgaatgcacaactttca
aactttgaagtgttgaattcgaatcttgtcatttgccacctcgataagtcggctacgctt
actatggagttttccataaataaggggcgtggctatgtgtcggcagaggagaatcgcgca
gagcataatgagctttccacgatagcgatcgactcgatctatacgcctattcggaatgtc
aagtatgcggtagagaatttccgcgtagaacagaagactgattacgaaaagctcctgatg
gaagtgaccacagatggttcgattcgtcctgtagatgctcttcgtgaagcagctcaaatc
ttgatatcccacttctctctgttcgcagagaataagatagcgatagagtatgtggatata
gtcgatactgatgagttcgatgaagattctttgcatatgcgtcagctattgaagtcaaag
ctttcaggtcttgacctgtctgttcgtgctctcaattgtctgaatgcagccggggtcgat
acgttgggcgatttagtgagtctgtcacggagcgatctgatgaagattcgcaacttcgga
aagaagtctttgacagagcttgacgaactgctggtaacgctgaatttgtcgtttgggatg
gatatcagtaagtataaattagataaagactaa
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