Porphyromonas gingivalis TDC60: PGTDC60_0398
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Entry
PGTDC60_0398 CDS
T01516
Symbol
hup-1
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pgt
Porphyromonas gingivalis TDC60
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_0398 (hup-1)
03036 Chromosome and associated proteins [BR:
pgt03036
]
PGTDC60_0398 (hup-1)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0398 (hup-1)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PGTDC60_0398 (hup-1)
Chromosome and associated proteins [BR:
pgt03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PGTDC60_0398 (hup-1)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PGTDC60_0398 (hup-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
DUF2267
HU-CCDC81_euk_2
HU-DNA_bdg
UPF0181
TFIIB
Motif
Other DBs
NCBI-ProteinID:
BAK24567
LinkDB
All DBs
Position
429426..429692
Genome browser
AA seq
88 aa
AA seq
DB search
MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG
INPKTKKSISIPARKVVRFKPGSTLELK
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagacagattttattgcagctgtagctgaaaaggccaacctcacaaaggctgat
gcccagagagcagtaaatgcatttgcagaagttgtaacagaacagatgaatgccggagag
aaaatcgctctcatcggattcggtactttctcagtgagcgagcgtgctgctcgcaaaggc
attaatcctaagacgaaaaaatctatttctatccctgcccgtaaggttgttcgtttcaaa
ccgggctctactttggaacttaagtaa
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