KEGG   Porphyromonas gingivalis TDC60: PGTDC60_0431
Entry
PGTDC60_0431      CDS       T01516                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
pgt  Porphyromonas gingivalis TDC60
Pathway
pgt00740  Riboflavin metabolism
pgt01100  Metabolic pathways
pgt01110  Biosynthesis of secondary metabolites
pgt01240  Biosynthesis of cofactors
pgt02024  Quorum sensing
Module
pgt_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:pgt00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    PGTDC60_0431 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PGTDC60_0431 (ribD)
Enzymes [BR:pgt01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     PGTDC60_0431 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     PGTDC60_0431 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD APOBEC_N
Other DBs
NCBI-ProteinID: BAK24600
LinkDB
Position
complement(462682..463674)
AA seq 330 aa
MTPDPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSV
RDRALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVATLDPFPSVSGRGIKMLRD
AGVSVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLST
PLTTRFVHHRRMIHDAILVGFRTALLDNPSLTVRHWYGRNPLRVVTDRHLALPRHLTLFD
GSVPTLVFTEKEQPSGYPSSVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGACILRSF
IDSGLYDDVRIEHSTIILNEGVRAPHLPSY
NT seq 993 nt   +upstreamnt  +downstreamnt
atgactcccgatcctctgtatatgcgccgtgccatcgaattagcacagaatgccgaaggg
tttacctctcccaatccgcttgtcggagcagtccttgtggctcatgggcgtatcatcggt
gagggctaccaccactgtgccggcatgccccatgccgaagtcatcgccataaactctgtg
cgagacagggctttgctcagagaaagcaccctctatgtcagtctggagccttgctctcat
tatggcaaaacgcctccctgtgccgagctgatccttcgggagggcatccctcatgtagtg
gtggccacgctcgatcctttcccatccgtttcaggaagaggcatcaagatgttgcgtgac
gcaggtgtatcggtccaagtgggactacttgcagaggaagccgaggagctgaatcgtcat
ttcctcacagcccaacggcaacaccgcccctatgtcacactcaaatgggcagagagtagc
gacggattcattgacgcactgcgcgacgatgcctccacccctcctgtcaggctgagtaca
cctctgaccacacgctttgtgcaccataggcgaatgatacacgatgccatattggtgggg
ttccgtaccgctcttttggacaatccctctctgacggttcggcattggtacggccgaaat
ccgctgcgtgtggtcacagatcgccatctggccctcccacgccacctcaccctcttcgat
ggcagtgtgcccacactggtctttaccgaaaaagaacaaccctccggctatccctcctct
gtctctttcgttcggatcgatccctcccgccctcccgtggagcagatgctggccgaactg
cacgctcgcggcatacagtcgctgttagtggaggggggagcctgtatactccgatctttc
atagacagcggtctgtacgatgatgtacgtatcgaacacagcaccattatcttaaacgag
ggagttcgtgctcctcaccttccctcttactga

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