Porphyromonas gingivalis TDC60: PGTDC60_0549
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Entry
PGTDC60_0549 CDS
T01516
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PGTDC60_0549 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_0549 (xth)
Enzymes [BR:
pgt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PGTDC60_0549 (xth)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PGTDC60_0549 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
SUV3_C
Mur_ligase_M
Motif
Other DBs
NCBI-ProteinID:
BAK24718
LinkDB
All DBs
Position
577708..578472
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AA seq
254 aa
AA seq
DB search
MKIISYNVNGLRAAMKKDLIGWLREENPDVLCLQETKMQNDQFEKEEFEALGYRSYLFSA
QKKGYSGVAIITKHQPDHIEYGMGMEEYDAEGRFIRADFGDLSIVSVYHPSGTSGDERQA
FKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMSR
FLADGYVDTFRHTHPELVLYSWWSYRFQARSRNKGWRIDYCMVTNNLTDRIKGADILNEA
VHSDHCPIVLEIAE
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattatcagttataatgtcaacggccttcgggctgcgatgaagaaagatctgatc
ggttggcttcgagaagagaatcctgatgtgctgtgcctgcaggaaactaagatgcagaat
gaccaattcgaaaaagaagaatttgaagcactgggctaccgctcgtatcttttttcggct
caaaagaaaggatatagcggtgtggctatcatcacaaagcatcaacctgatcatatagaa
tacggcatgggtatggaagaatacgatgcggaaggtcgttttatccgtgccgatttcggc
gatctttctatcgtaagcgtttatcatccatccgggacgagtggcgatgagcgtcaggcc
ttcaagatggtttggctggagcacttccaatcttatgtcaatgaactccgcaagagtcgc
cctaacttgatcctgtgcggtgactacaatatctgccacgaacctatcgacatccatgat
cccattcgcaatgccaaaaacagtggcttccttccggaagaacgtgagtggatgagccgt
ttcttagcggacggatatgtcgatacttttcgtcatacccatccggagttagtcctatac
tcttggtggagctatcgcttccaagcacgcagtcgcaataagggctggcgcatagattac
tgtatggtgacaaacaacctgaccgaccgaataaaaggtgccgacatattgaatgaagcc
gttcactcggatcactgtccgatagttctggaaatagctgaataa
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