Porphyromonas gingivalis TDC60: PGTDC60_1228
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Entry
PGTDC60_1228 CDS
T01516
Name
(GenBank) putative ribonuclease E
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
pgt
Porphyromonas gingivalis TDC60
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_1228
03009 Ribosome biogenesis [BR:
pgt03009
]
PGTDC60_1228
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PGTDC60_1228
Ribosome biogenesis [BR:
pgt03009
]
Prokaryotic type
rRNA processing factors
PGTDC60_1228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAK25383
LinkDB
All DBs
Position
complement(1265121..1266635)
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AA seq
504 aa
AA seq
DB search
MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFLHYLDLGL
TFDAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGP
RLTAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGK
RASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKA
FRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQT
EAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQH
RQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVES
SILFTDQLEEKVAKMVMEHQVKQFVLHVHPYVAAYLKKGFLTSILKKWKLKYAKGIKLIP
DESLGFLDYTFYDYDGNELDILDE
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcctggaggatggcaaactcgtggagcttcaacgcgaaccgcgcaatctttct
tttgcagtgggggatatttacctcggtaaagtgaagaaggtgatgcccggtctgaacgct
gctttcgtggatgtaggatacaagaaggacgcatttcttcattatcttgatttgggcttg
actttcgatgctcagcagaagatgatggagatgatgacaaaaagcaaatcgattccatcc
ttgtccaaagtgcccctcggcagcgacctccctaaagaggggaagatcgcagatgtgctc
aaggccggacagcagatcttggtgcagatagccaaagagccgatctctaccaaaggccca
cgcctgactgccgagctttcttttgccggccgttcattggttttggtaccctttgcagac
aaagtgtcggtgtctcagaagattcgttctgccgaagagcgagcacgcttgcggcagttg
attatcagcatcaagcccaagaattttagcgttatcatacgcacttctgctgaaggtaaa
cgggcatccgaattggacaaagagttgcagagcctactacgtcgttgggacgacaacatc
aagaagcttttgcgtgccaaggctccgtccattgtttatgaggaagccagccgtactctg
ggactcttgagggacaacttcaatccctcttaccagagtattattgtcaatgacaaggct
tttcgggacagtttgagcgactatgtcgagttgatagctccgggacgggaggaaatcgtt
cagtattatcagggcgaactacccattttcgaccattttgccattacgaagcagattaaa
gctctcttcggacgtactgttacgtataagagtggtgcttatctgattattgagcagacg
gaggccatgcacgtggtggatgttaatagcggtaaccgctcgcgtggcagtaccgagcag
gaagcaacggccgttgatgtcaatatggctgcagccgaagagctggccagacaactgcgc
ttgcgcgatatgggtggtatcatcgtagtggacttcatcgatatgagcgaagcccagcac
cgtcagcagttgtacgaacacatggtcaaattgatgtcggccgacagagcgcgacacaat
atcttgccattgagcaaattcggcgttatgcagattacgcgccaacgtgttcgtccggcg
atggtcatccataccgaagagtgttgtcccacatgtttgggtaccggcaaggtagaatcc
tccatactcttcacggatcagttggaagaaaaagtggccaaaatggtcatggagcaccaa
gtcaaacaattcgttcttcacgtacatccatacgtggcagcatacctcaagaaaggtttc
cttacttctatcttgaagaaatggaaactcaagtatgccaaggggatcaaacttatcccc
gatgaaagtctgggattcctggactacacattttacgactacgacggcaacgagctggat
attttggatgaatga
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