Porphyromonas gingivalis TDC60: PGTDC60_1229
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Entry
PGTDC60_1229 CDS
T01516
Symbol
hup-2
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pgt
Porphyromonas gingivalis TDC60
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_1229 (hup-2)
03036 Chromosome and associated proteins [BR:
pgt03036
]
PGTDC60_1229 (hup-2)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_1229 (hup-2)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PGTDC60_1229 (hup-2)
Chromosome and associated proteins [BR:
pgt03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PGTDC60_1229 (hup-2)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PGTDC60_1229 (hup-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-DNA_bdg
FliG_N
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
BAK25384
LinkDB
All DBs
Position
complement(1266957..1267235)
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AA seq
92 aa
AA seq
DB search
MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTA
RNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagctgacgtagtgaacgctattgcgaagtcgacagggattgataaagaaacg
accctgaaagtcgtagagtcgttcatggacactatcaaagactccctttcggaaggtgat
aatgtatatctccgcggatttggtagcttcattgtgaaggaaagagctgagaagacagca
cgtaatatttcgaagcagacgactatcatcatccccaaaaggaatattccggcgtttaag
ccttcgaaaatctttatgagtcagatgaaacaagactaa
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