Porphyromonas gingivalis TDC60: PGTDC60_1321
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Entry
PGTDC60_1321 CDS
T01516
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTDC60_1321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_1321
Enzymes [BR:
pgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGTDC60_1321
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGTDC60_1321
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
IF2_N
Cas3-like_C_2
Utp25_C
HEM4
AAA_22
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
BAK25475
LinkDB
All DBs
Position
1360975..1362258
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AA seq
427 aa
AA seq
DB search
MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL
DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR
GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS
CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICYEAQKLPILRKLFE
QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVA
TDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKI
ETFLGKSVYKLPVDPEFGEVPAYEPAKRRPRRSGRSGDGRSGRSEKDKRQGKTAPNGRKR
GGTRQRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttgatgaattgaatttaggagatgaagtattggatggtctcgatgccatgaat
ttcatcgagaccacacctgtgcaggctgcaaccatcccacccattctggagggtcgcgac
gtgatcgcttgtgcccagaccggcaccggcaagacggcagcctatctgctccccatactg
gatcgcctgagtgcaggcgagtttgcctccgatgtggtgaatgctgtgatcatggctccc
actcgcgaactggcgcagcagatagatcagcaggtggaagggttttcttacttcatgccg
gtatcggccgtagccatatatgggggtacggacggggtggcatgggagcagcaacgtcgg
gggatggctatgggggcggacatcgtgatagccacaccgggacgtctgatctcgcatctg
aatctcggttcggccgacctctcccacgtctcctacttcgttttggatgaggccgaccgc
atgctggacatgggtttcttcgatgacattatgcagatatacaagcagctaccgagttcg
tgccagacggttatgttttcggctacgatgccccccaagatccgcaagctggcagcatcc
attctaagggatccgatagaggtggagatcgccatcagccgtccgccggagagcatcatg
cagagcgcatacatttgttacgaagcgcaaaagctgccgatactccgcaagctcttcgag
cagtcggcaccgaagcgtaccattattttcgcatcggccaagctcaaagtgcgtgagctg
acttccactctccgcaagatgggtttcaatgtggccgatatgcactccgatctggagcag
tcccagcgcgaacaggtgatgcgcgacttcaaaaacggctatgtggatgtactcgtggcc
actgacatcgtagcccgagggatcgacatcgacaacatacgcgtagtcatcaactacgac
attccccacgatcccgaggactatgtacaccgtatcgggcgtactgcccgaggaacaaac
ggggagggtctggctatcactttcgtctccgaggaagagcagagcgacttccacaagatc
gagacgtttctgggcaaatcggtctataaattgcctgtcgatccggagtttggcgaagtc
cctgcctacgaaccggcgaaacgtcgtccccgccgttccgggcgaagcggtgatggacgt
tcaggtcgatccgaaaaggacaaaaggcaaggaaaaacagctccgaacgggcgcaagcgc
ggaggcacgagacagaggcgatag
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