Porphyromonas gingivalis TDC60: PGTDC60_1362
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Entry
PGTDC60_1362 CDS
T01516
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PGTDC60_1362 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_1362 (mfd)
Enzymes [BR:
pgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGTDC60_1362 (mfd)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PGTDC60_1362 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAK25512
LinkDB
All DBs
Position
1405492..1408860
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AA seq
1122 aa
AA seq
DB search
MIKSPQPIDILSLFRRHNGVQALMKALDREKYVALDGLCGSSAALIVKLLHESGRPVLCI
ASDMEEAGYLFSDLEQLGGEGSALFFPSSYKRAIKYGHTDAAQQVLRAEALAALSMEGSR
PLVVSYPEAVAERVIAGDILEKEMQSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFA
VRGSLLDVFSFSRELPVRIDFFDDEIESIRLFEVESQLSVGTLSEVVLMPDVAGDVRAEE
CLLGLFPKNTIIVLPDRPFLEDRLQMVFTDAPLFDDGEGFESLAAMQERLTSPKELMDKL
NGFTTIATGSGRSGNYRIGFKTQPQPLFHKNFDLLIDQLEQWRDAGYRLLLATASDKQYE
RVEEILSERGSSSLLPERVSLTLHEGFSDEALRIVLLTDHQLFDRYHKYNLKSDKARSGK
VTLSLKELNQFSQGDYIVHIDHGIGRFGGLITTDVGGKRQEVIKLIYRNNDIIFVNLHSL
HKLSKYKGGDSDAQVELSRLGTGAWQKLKERTKKRVKDIARDLIRLYARRKEERGFAFSP
DSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLICGDVGFGKTEVAVRAAFKA
ATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRARSAKDIKAILHDLAEGRID
IIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQVNVDTLTMSATPIPRTLQF
SLMGARDLSNINTPPPNRYPVATELARFSPDIVREAVNFEMSRNGQVFIVHNRIDNIEEI
AGIVQREVPDARVAVGHGRMLPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIII
DDAHRYGLSELHQLRGRVGRSNRKAFCYLLSPPLSVLSDDSRRRLQAIENFSDLGSGIRI
ALQDLDIRGAGNVLGAEQSGFIADLGYETYSKVFNEAVSELKADEFADLYAENQEAIPSA
SRFVVETTVESDLELSFPEEYVPLDSERILLYRELDNLSTDEELDAFRRRMQDRFGKIPP
EGEELIRVPRLRRLGRSLGIEKIVLRGDQMSFHLVGKEDSPYYQSEVFGMLLEYIAAHTR
RCEIRQSGGKRIVRLREVPDVLTACELCTAISTRSSAERIEL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaatctccccaaccaatcgatattctttccctctttcgccggcacaatggtgtg
caggctttgatgaaagccctcgaccgagagaagtacgtagctctcgacgggctttgcggg
tcgtcggcagctcttatagtgaaactgctgcacgaatccggtcgccctgtcctttgcatt
gcttcggatatggaagaagccggctatctcttctccgatttggagcaactcggaggagag
ggtagtgcactttttttcccttcctcctataagcgtgctatcaaatacgggcataccgat
gcggcacaacaggtacttcgtgccgaggctttggccgctctttcgatggagggcagtcgt
ccgcttgtcgtctcttatcccgaagccgtggcagaacgcgtgattgccggcgacatactg
gagaaagagatgcagagcatccgtcagggagacaggttggatcgggattttctcagagac
cttctattggaatggggcttcgaacgaaccgattacgtttatgagccggggcaatttgcc
gtacgaggcagtttgctggatgtgttttctttcagtcgcgagctaccggtacgtatcgac
ttcttcgacgacgagatagaaagcatccgtctcttcgaggtggagagtcagctctcggtg
gggacgctgtcggaggtcgtactgatgcctgatgtggcaggagatgttcgtgccgaggag
tgtttgctcggtttattcccgaagaatacgatcatcgtattgccggacagaccgtttttg
gaggatcgtctgcaaatggtatttaccgatgctccgctcttcgatgacggcgaaggattc
gaatcgctcgcagccatgcaggagcggctcacatcgcctaaggagctgatggataaattg
aatggtttcacgaccattgccaccggtagcggcaggagcggcaattaccgtatcggcttc
aagacccaaccgcagcctttgttccacaagaatttcgatctgctcatcgatcaactggag
caatggcgagatgccggctacagattgcttttggccacagcctcggataagcaatacgag
agagtggaagagatcctttccgagcgtggaagctcttcgctccttccggaaagagtatcg
ctcaccttacatgagggtttttcggacgaagctcttcggatcgttctgcttacggatcac
cagcttttcgatcgttaccacaaatacaatctcaaaagcgataaagcgcgttcggggaaa
gtgaccctctcgctgaaggagctgaaccaattctctcaaggcgactatatcgtgcatatc
gatcacggtatcggccggttcggaggccttatcacgaccgatgtgggagggaagcggcag
gaagtaatcaaactcatttaccgaaataacgatataatattcgtcaatctgcacagcctc
cataagttgtccaaatacaaaggtggtgacagtgatgcgcaggtagaactgagtcgtctc
gggacgggagcctggcaaaagctcaaagagaggaccaaaaagcgtgtcaaggatattgct
cgcgatctgatccggctctatgcccgaaggaaagaagagcgaggctttgcattcagtccg
gacagctacctacagcacgaattggaagcctctttcctgtacgaagacacgcccgatcag
gagcgtgccacggcagaggtaaaagccgatatggaaagcgatcgtccgatggatcggctt
atctgcggtgatgtcggtttcggcaagacggaagtggctgttcgtgccgcattcaaagcc
gccacagacggcaaacaggtagcgatactggtgccgactaccgtactggcctatcagcac
tatcagacgttcagggacagattgcaaaatttccccgtgcgtatcgaatacatatcccgc
gcccgttcggccaaggatattaaagcgattctgcacgatctggcagaaggtcggatcgat
ataattataggtacgcacaggctcgtgagcaacgatatcagattccatgacctcggcctc
cttgtgatcgatgaagaacagaaattcggtgtggcagtaaaagaaaagctgcgcaaacta
caggtcaatgtcgatacgctgaccatgtctgctacacctatcccccgtactttgcaattc
tctctgatgggagcacgcgacctctcgaatatcaacaccccaccgccgaatcgctatccc
gttgccaccgaactggcacgattcagccccgacattgttcgggaagctgtcaatttcgag
atgtcccgcaacggacaggtctttatcgtccacaaccgaatagataatatagaagagatc
gccggcatagtacaacgtgaagtccccgatgcacgcgtggcagtggggcatggccgtatg
ttgcccacagaactggaacgacttatcctcgattttgttcattacgaatatgatgtgttg
gtcgcaactacaatcattgaaaacggtatcgatgtgcccaatgccaataccattatcatt
gacgatgcccaccgatacggtctgagtgagttgcaccagcttcgcggacgtgtgggacgg
agcaacaggaaagccttttgctatcttttgagtccgccgctcagtgtcctgagcgacgat
tcgcgccgtcggctccaagccatagagaacttcagcgacctcggcagcggtattcgcatt
gctcttcaggatttggatatacgtggtgccggcaatgtactcggtgccgagcagagcgga
ttcattgccgatttgggatatgagacgtatagtaaggtttttaatgaagccgtttccgaa
ctcaaagcggatgagtttgccgatctttatgcagagaaccaagaagctattccttcagct
tcccggtttgtagtggagacaacggtcgagagcgatttggaactttccttccccgaagaa
tatgtgccgttggattcggaacgcattcttctttatcgggagttggacaatctctccacg
gacgaggagctcgatgcattccggcgccgtatgcaggatcgtttcggtaaaattccgccg
gagggagaggagttgatacgggtacctcggctgcgacgcctcggccgttcgctcggtata
gagaagatcgtattgcgtggggaccagatgagtttccatctggtcggcaaggaagacagc
ccttactatcagagcgaagtctttggcatgttgttggaatatatcgcagcgcacacacgt
cggtgcgagattcgtcagtccggaggaaagaggatcgttcgcttgcgcgaggtgcccgat
gtgctcaccgcttgtgaactctgtacagccatttccactcgatcgtcagcggaaaggata
gaattgtag
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integrated database retrieval system
