Porphyromonas gingivalis TDC60: PGTDC60_1516
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Entry
PGTDC60_1516 CDS
T01516
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTDC60_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_1516
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PGTDC60_1516
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Cas3_HD
DUF641
Motif
Other DBs
NCBI-ProteinID:
BAK25665
LinkDB
All DBs
Position
complement(1575064..1576605)
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AA seq
513 aa
AA seq
DB search
MGIGTLLLFTFLGLVAGATAVWLITRTLLKQRTEGILAEARREAEVIKQKKLLEVKEKFL
QLKGDLEKQVAQRNSKLQSVESKLKSREQTLNQRQEDITKKGQEMDLMRENLTAQLSVIE
KKKTELDELKTREQAHLESLSGLSAAEAKDRLVESLKDEAKGQASAYVNEIIEEAKMTAN
KEAKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAAAGIEIIVD
DTPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVSKVRKQVEEEIIETGKRTV
IDLGIHGLHPELIRLIGKMKYRSSYGQNLLQHSRETANLCAIMASELGLNPKKAKRAGLL
HDIGKVPDDEPELPHALLGMKLCEKFKEKPDICNAVGAHHDEVEMMSLIAPIVQVCDAIS
GARPGARREIVEAYIKRLNDLEQLAMSYPGVIKTYAIQAGRELRVIVGADKTDDASVETL
SNEIAKRIQDEMTYPGQVKITVIRESRSVSYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggaataggaacacttttattatttacttttttggggcttgtagccggtgccactgcc
gtatggctgatcacgcggacactactcaagcaaaggacagaggggattctcgccgaggct
cgccgtgaagccgaggtgatcaagcagaagaagctcctcgaagtgaaggagaaatttctc
caactgaaaggcgacctggaaaagcaggtggcacagcgcaatagcaagctccaatcggtg
gagagcaaactcaaaagccgcgaacaaaccctcaaccaacgtcaggaagatataacgaag
aaggggcaggaaatggatttgatgcgtgagaatctgactgctcaactctccgtgattgaa
aagaaaaagacggaactcgacgagctgaaaactcgcgaacaggctcatctggagtctctg
agcggactctccgctgccgaggctaaagacagactggtggaaagcctcaaagatgaagcc
aagggacaagcctctgcatacgtcaatgagattatcgaagaggccaagatgactgccaac
aaagaggccaagcgaatcgtcatccaatccatccagcgcgtggctacggagacggccatc
gaaaactccgtgaccgtcttccacatcgaaagcgacgagatcaaagggcgcatcatcggc
cgagaaggccgcaacatccgtgcattggaggctgctgccggtatcgagatcattgtagac
gatacgccggaagcgatcgtcctatcgggattcgatccggtgcgtcgtgagatagcgcgt
ctggcactgcatcagttggtacaggatggacgtatccacccggcacgcatagaagaggtg
gtatccaaagtaagaaaacaggtggaagaagagatcatcgagacgggcaaacggacggtg
atcgaccttggaatccacggtctgcatccggaactgatccgtctgatcggtaagatgaag
tatcgctcttcctatgggcagaatctcttgcagcattcgcgtgagacagctaacctctgt
gccataatggccagcgaattggggctgaatccgaagaaagccaaacgcgccggtctgctg
cacgacatcggcaaggtgcccgacgatgagccggaattgccacacgctctcttaggcatg
aaactctgtgagaagttcaaagagaaacccgacatatgcaacgccgtgggagcgcaccac
gatgaggtggaaatgatgtcgctcatagctcctatcgtacaggtgtgcgacgccattagc
ggcgcgcgtccgggagcacgccgtgagatcgtggaagcctatatcaagcgtctgaatgat
ctggagcaactcgccatgtcctatccgggcgttatcaagacctatgctattcaggccggc
cgcgaactccgtgtgatcgtcggtgccgacaaaacggacgatgcctcggtggaaacgctc
tcgaacgaaatagccaaaagaatccaggacgagatgacctaccccggacaagtgaagatc
acagtgatccgcgaatctcgctccgtcagctacgccaaataa
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