KEGG   Porphyromonas gingivalis TDC60: PGTDC60_1883
Entry
PGTDC60_1883      CDS       T01516                                 
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pgt  Porphyromonas gingivalis TDC60
Pathway
pgt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGTDC60_1883 (pnpA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgt03019]
    PGTDC60_1883 (pnpA)
   03016 Transfer RNA biogenesis [BR:pgt03016]
    PGTDC60_1883 (pnpA)
Enzymes [BR:pgt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     PGTDC60_1883 (pnpA)
Messenger RNA biogenesis [BR:pgt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PGTDC60_1883 (pnpA)
Transfer RNA biogenesis [BR:pgt03016]
 Prokaryotic type
  tRNA degradation factors
   PGTDC60_1883 (pnpA)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH-I_KHDC4-BBP DUF7071
Other DBs
NCBI-ProteinID: BAK26032
LinkDB
Position
complement(1954394..1956625)
AA seq 743 aa
MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPL
QVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFS
ADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMV
GATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVN
DEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYY
HDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLG
TKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIPT
DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAI
LSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKI
MEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGV
IEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEV
DWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKPEGYVEPQPRERRERRE
GGREGGRNFERRGGDRDHREPRG
NT seq 2232 nt   +upstreamnt  +downstreamnt
atgcttaacgttgtaagtaagactatcgatctgggagatggtcgttccatcaagatcgaa
accggtaaattggccaagcaggccgatggcgccgtgacagtcaccatgggcaatacggta
ttgctcgctacagtttgtgcagccaaagacgctaaccccggctgcgacttcatgcctctt
caggtggaatacaaagagaaatactccgccatcggacgcttccccggaggattcactcgc
cgcgaaggcaaagcttcggattacgagatcctgacctgccgccttgtggatcgtgccctt
cgtccgctattcccggacaattatcatgcagaggtattcgtcaatgtgatcctcttttca
gccgatggcgaggatatgcccgacgccttggccggtctggccgcttcggcggctcttgcc
gtttccgatataccgttcaacggccctatcagcgaagtgcgcgtagcacgtgtggacggc
cgctatatcgtcaatcctactttcgagcagctcgaacgcgcagacatcgacttgatggtc
ggagccacaatggacaacatcatgatggtcgaaggtgaaatggacgaggtacaggaatcc
gaaatgctcgaaggcatacgcgtggcacacgaagccatcaaggtacagtgcaaggcgcag
ctcgaactatccgaagctgtaggaaaacttcaaaagcgcgaatacagccatgaagtaaac
gatgaagacctgcgcaagaaagtgcacgacgaatgctatgctcgtgcctatgaggtggct
accagcggaaccggcaaacacgagcgcggcgaagcttttgaaaagatcgtggaagagttc
aaagctcaatatacggaagaagaacttgccgagaaggccgaaatgatagctcgctactac
cacgatgtggaaaaagaagcgatgcgtcgtgccatcctcgacgaaggcaaacgcctcgat
gggcgtaagaccacggagatccgtccgatatggatcgagaccgactgcctgcccggcccg
catggctcagctatattcacccgtggtgagacgcagtcgctcacgaccgtcacgctcggt
acgaagagcgacgaaaagctcgtggacgatgtactcaattatacgaaagagcgattcctg
ctgcactacaacttccctcctttctctaccggtgaagcccgtccccaacgcggtgtaggc
cgccgcgagatcggtcatggcaatttggcgcatcgcgccctcaagcgtatgataccgacg
gactacccctatgtggtacgtgtaatcagcgacattctggagtccaatggctcgtcctcg
atggccactgtctgcgccggtactttggctctgcgcgatgccggtgtacagattcgcaag
cccgtatccggcattgccatgggcttgatctcagagaatcagggcaagaactacgccatc
ctctccgatattctcggtgacgaagaccatctcggcgatatggacttcaaggtaacgggt
acgaaggacggcattacagccacgcagatggacatcaaggtggatggtctcagctatgag
attttggagaatgctctggagcaagccaagcaaggacgcctacacatcctcggcaagatc
atggaagctcagcccgagacaagagatgacctcaagcctcatgcaccgcgtatcgagaag
atgcatatcggcaaggagtttatcggagcagtcataggcccgggcggaaagatcatccaa
ggtatacaggagaagagtggtgccacagtgaacatcgaagaggtagatggcatgggtgtc
atcgagatcagtggtacgaacaaaccctgcatcgatgctgcaatcggcatgatcaagggc
atcgtggctatgccggaagtcggagaaacctatccgggcaagatcacaagtgtgatgcca
tacggctgcttcgtcgaattcctccccggcaaggaaggacttctgcatatctcggaagtg
gattggaaacgattcgagaccatcgaggacaccaacctgaaagaaggcgaatccatcaac
gttaagctgctcgatatagatccgaagaccggcaagttcaaactcagccgcaaggtgcta
ctggaaaaaccggaaggctacgtggagcctcagccgagagagcggcgtgagcggcgtgag
ggaggacgcgaaggaggtcgtaacttcgaacgtcgtggtggtgatcgtgaccaccgcgag
cctcgtggctaa

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