Porphyromonas gingivalis TDC60: PGTDC60_1883
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Entry
PGTDC60_1883 CDS
T01516
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTDC60_1883 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgt03019
]
PGTDC60_1883 (pnpA)
03016 Transfer RNA biogenesis [BR:
pgt03016
]
PGTDC60_1883 (pnpA)
Enzymes [BR:
pgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PGTDC60_1883 (pnpA)
Messenger RNA biogenesis [BR:
pgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PGTDC60_1883 (pnpA)
Transfer RNA biogenesis [BR:
pgt03016
]
Prokaryotic type
tRNA degradation factors
PGTDC60_1883 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
DUF7071
Motif
Other DBs
NCBI-ProteinID:
BAK26032
LinkDB
All DBs
Position
complement(1954394..1956625)
Genome browser
AA seq
743 aa
AA seq
DB search
MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPL
QVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFS
ADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMV
GATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVN
DEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYY
HDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLG
TKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIPT
DYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAI
LSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKI
MEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGV
IEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEV
DWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKPEGYVEPQPRERRERRE
GGREGGRNFERRGGDRDHREPRG
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacgttgtaagtaagactatcgatctgggagatggtcgttccatcaagatcgaa
accggtaaattggccaagcaggccgatggcgccgtgacagtcaccatgggcaatacggta
ttgctcgctacagtttgtgcagccaaagacgctaaccccggctgcgacttcatgcctctt
caggtggaatacaaagagaaatactccgccatcggacgcttccccggaggattcactcgc
cgcgaaggcaaagcttcggattacgagatcctgacctgccgccttgtggatcgtgccctt
cgtccgctattcccggacaattatcatgcagaggtattcgtcaatgtgatcctcttttca
gccgatggcgaggatatgcccgacgccttggccggtctggccgcttcggcggctcttgcc
gtttccgatataccgttcaacggccctatcagcgaagtgcgcgtagcacgtgtggacggc
cgctatatcgtcaatcctactttcgagcagctcgaacgcgcagacatcgacttgatggtc
ggagccacaatggacaacatcatgatggtcgaaggtgaaatggacgaggtacaggaatcc
gaaatgctcgaaggcatacgcgtggcacacgaagccatcaaggtacagtgcaaggcgcag
ctcgaactatccgaagctgtaggaaaacttcaaaagcgcgaatacagccatgaagtaaac
gatgaagacctgcgcaagaaagtgcacgacgaatgctatgctcgtgcctatgaggtggct
accagcggaaccggcaaacacgagcgcggcgaagcttttgaaaagatcgtggaagagttc
aaagctcaatatacggaagaagaacttgccgagaaggccgaaatgatagctcgctactac
cacgatgtggaaaaagaagcgatgcgtcgtgccatcctcgacgaaggcaaacgcctcgat
gggcgtaagaccacggagatccgtccgatatggatcgagaccgactgcctgcccggcccg
catggctcagctatattcacccgtggtgagacgcagtcgctcacgaccgtcacgctcggt
acgaagagcgacgaaaagctcgtggacgatgtactcaattatacgaaagagcgattcctg
ctgcactacaacttccctcctttctctaccggtgaagcccgtccccaacgcggtgtaggc
cgccgcgagatcggtcatggcaatttggcgcatcgcgccctcaagcgtatgataccgacg
gactacccctatgtggtacgtgtaatcagcgacattctggagtccaatggctcgtcctcg
atggccactgtctgcgccggtactttggctctgcgcgatgccggtgtacagattcgcaag
cccgtatccggcattgccatgggcttgatctcagagaatcagggcaagaactacgccatc
ctctccgatattctcggtgacgaagaccatctcggcgatatggacttcaaggtaacgggt
acgaaggacggcattacagccacgcagatggacatcaaggtggatggtctcagctatgag
attttggagaatgctctggagcaagccaagcaaggacgcctacacatcctcggcaagatc
atggaagctcagcccgagacaagagatgacctcaagcctcatgcaccgcgtatcgagaag
atgcatatcggcaaggagtttatcggagcagtcataggcccgggcggaaagatcatccaa
ggtatacaggagaagagtggtgccacagtgaacatcgaagaggtagatggcatgggtgtc
atcgagatcagtggtacgaacaaaccctgcatcgatgctgcaatcggcatgatcaagggc
atcgtggctatgccggaagtcggagaaacctatccgggcaagatcacaagtgtgatgcca
tacggctgcttcgtcgaattcctccccggcaaggaaggacttctgcatatctcggaagtg
gattggaaacgattcgagaccatcgaggacaccaacctgaaagaaggcgaatccatcaac
gttaagctgctcgatatagatccgaagaccggcaagttcaaactcagccgcaaggtgcta
ctggaaaaaccggaaggctacgtggagcctcagccgagagagcggcgtgagcggcgtgag
ggaggacgcgaaggaggtcgtaacttcgaacgtcgtggtggtgatcgtgaccaccgcgag
cctcgtggctaa
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integrated database retrieval system