Porphyromonas gingivalis TDC60: PGTDC60_2042
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Entry
PGTDC60_2042 CDS
T01516
Symbol
dnaX
Name
(GenBank) DNA polymerase III, gamma and tau subunits
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03030
DNA replication
pgt03430
Mismatch repair
pgt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGTDC60_2042 (dnaX)
03430 Mismatch repair
PGTDC60_2042 (dnaX)
03440 Homologous recombination
PGTDC60_2042 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_2042 (dnaX)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_2042 (dnaX)
Enzymes [BR:
pgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PGTDC60_2042 (dnaX)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PGTDC60_2042 (dnaX)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PGTDC60_2042 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
DNA_pol3_gamma3
RuvB_N
RCF1-5-like_lid
AAA_22
AAA_5
AAA_14
AAA_30
DEAD
DNA_pol3_delta_C
AAA_16
AAA_24
AAA_assoc_2
AAA_19
AAA_2
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
BAK26184
LinkDB
All DBs
Position
complement(2117289..2119097)
Genome browser
AA seq
602 aa
AA seq
DB search
METKYIVSALKYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIF
ARAINCLERLPDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIEQANVPPQI
GKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKR
IPPARIEQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANT
IENLNILDYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGLASFFRDLMMAQD
ASTLPLLEQSEVVIQRYVDMAARCPTSFLYQSLKILNACDQQYRQSNGKRLLLELSLMNI
AALFSKGLTAPPPTHGAQHANPAVSGSVSPRPAPAKEQPSVAPSQSSVPPQPSIGEQRRQ
PETTAPTITEDKPEQTKVVPPTRPMATSTVGSEGRFTLRGIRNKQEQLQNNIQEVRTEMT
ESFDEEQLQLAWIEFAETKLSEEIHLKETMVNCLPKLRPGTSAFEVEVLNSRQEEEINNV
SARLLGFLADKLCNTTIRMNVRVSESTSLNRVPVSLDEKIERLNQENPLFDELRMRLGLS
LV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaaatacatcgtatctgcactcaaatatcgccccgattcttttgcctcgatg
gtcggtcaggaggcattgtccgctacactcaaaagctccatcgtacagcaaaagacagct
cacgcctatctcttttgtggcccgcgtggggtgggaaagacctcttgtgcacgcatcttc
gcccgtgccatcaactgtctggagcggttgccggatggagaagcttgtgggcgatgcgag
tcgtgcaaggctttcgatgagcagcgatccatgaatatatatgaactggatgccgcttcg
aacaattcggtagatgatattcgtctcttgatagagcaggccaatgtgccgccacagata
ggaaaatacaagatctacatcatcgacgaggtacacatgctctcgcagcaagccttcaat
gctttcctgaagactctcgaagaaccgccttcttatgtgatctttatattggctaccaca
gagaagcacaagatcctgcccactattctctcgcgctgtcagatattcgacttcaaacga
ataccaccggcccgaatagagcaacatttgcgctacgtagcagacagcgaggggataaaa
gccgaagccgaagctttggctataatagcgacaaaagccgatggagggatgcgcgatgct
ctttcgctcttcgaccgcattgcccgcttttcggaaggcaatattacctatgccaatacg
atagagaatctgaatatcctcgactacgattattatttccgtctgacggatttcttttta
cagggggattaccgatccgtattgattgtgttggacgaattgcttgccaagggattcgac
ggacaggtgatcgtgagcggattggcttctttcttccgcgatttgatgatggctcaggac
gcttctaccttgccgctgttggagcagtccgaagtagtcatacagcgatatgtggatatg
gcagcacgttgcccgacttctttcttataccaatcgctcaagatactgaatgcctgtgac
cagcagtatcgccagagcaatggcaagcgtctgttgttggagttgtcgctgatgaatatc
gcggctttatttagcaagggactgactgctccgcctccgacccatggagcacagcatgca
aatcccgcggtgagcggatcggtatctccccggccggctccggccaaagagcagccatcc
gttgctccatcacagtcctctgtcccacctcagccgagtatcggggagcagcgacgccaa
cccgagaccactgctccaactatcacggaagacaagcccgaacagacgaaagtggtacct
ccgacgcgcccgatggcaacatctactgtcggatcggaaggccggtttacattaagggga
atccgcaataaacaggaacaactccaaaataacattcaggaggttcggacagagatgacc
gaatcattcgatgaggagcagttgcaactggcttggatcgaatttgccgaaacgaagctc
tcggaggagattcacctgaaagaaacgatggttaactgtcttcctaaactccgtcccgga
acttcggcttttgaagtggaggtgctcaatagcaggcaagaggaagaaatcaataacgta
tcggctcgtttgctgggcttccttgcggataagctgtgcaatacgacgatacgaatgaat
gtgcgagtatccgaatctacatctctgaaccgagtgcctgtctctttggacgaaaagatc
gaacgcctcaatcaggaaaatcctctttttgatgagcttcgaatgcgtcttggtcttagt
ctggtatag
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