Pantherophis guttatus (corn snake): 117656266
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Entry
117656266 CDS
T07329
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pgut
Pantherophis guttatus (corn snake)
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgut03021
]
117656266 (SETX)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117656266 (SETX)
5.6.2.5 RNA 5'-3' helicase
117656266 (SETX)
Transcription machinery [BR:
pgut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117656266 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_16
DUF4164
SLFN-g3_helicase
AAA_22
Cep57_CLD_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
117656266
NCBI-ProteinID:
XP_060540569
LinkDB
All DBs
Position
Unknown
AA seq
2538 aa
AA seq
DB search
MSTCCWCTPGGPTTVKLLANYASATLSPNDVSAANDDLCYCLECVEEYHKARDEVPSLHQ
ILWDWEVSRLVNHFEKSMREEDENDLYLVEEDRVTPLTSCYTFEKRLRVPLLEVLKYPYL
LLHEHLSELCVDALCKMEEMNYSYQVVGKHPGIYLLMVHPNETIRRWAILTARNLGKVDR
DDYYDIQEVLICLFKVVELGLFENPDIYSSSGVEKTRLVLLPPHLYDTSNYKNYWLGLCM
LLSVLEEQAMDSLLLGPDKQNFMQSIMNTMRKQTDGEIHDPFWPVLHCFMVILDKLGSKV
WGQLVDPVQAFQTIINNASYKKEIESIRQNCPRTKSEPPSDYGDGTITCSQIVYNYNPER
PHKDSRLKTTACLDYCPNFYEEMQTLTDMFQYDIGRDMRLHHSTFLWFIPFVHSLMDLTG
LGVAYSMVVIQHLCSEVKEVLHHAVQPCDKVSQFFIWILVTVVELSWKKKCFNTLWVSSQ
NWVEVVVTCAGLPSMAFASGAERDLARNGPRSLTKVSSWEPDSIQSVCMNLIRVLLKEGY
QMGQKASPFLNELNLLRRSHEDWKLSPQQARELQSCLIEIIRSLWTKSSSTSSHRESPTS
LFREQEGRSPGYLPQEHSIYPSPRKQGEIFQEGTLFEKKYSLDEEAKGALCGEQSHQRNS
EFNLTNVKQEHKESLIHEEHMLHSTSTGGPTQKSGSFYSTLGNQNSSPNQSSFDKDFQKI
DTSGKEEKPRITNPDLHQRPSSSALEEKQIPKMIAEKLKSNKADLTLKLKQFVENRKRLL
GPESEKQQSIKEENQDGQEGTSRRTSRDGSSTSSCLPCKPALSLENQAKILSIKKEPRDS
LAEFKSAWKSGRDAEESSTDDELNVPLTEIRKELVRKKSMVQAMEPDVDREGKLYLAARQ
ESTLAYQNPIQRKVQGAFRSPSESKSQTLSSEAGGPSNQVIIISDTSSDEEENKVNLSRR
SQEENMSESLQKDLEPNKQEVITVSSSPLMYGECESQCFEFEIEDEIYSAWQDSQLDKTA
EADDVPGKSAGRSASPDLELARHLSERGDDTDGLGDDVIEKAEQELEEQVKVGKTKPKLP
AQADEENVSEGSTSVCSKHFTATHDDGQKSPRQSSALASPMPLSPSSSAGLLTPSLEPTP
EPRKSLAKSKWLNTAPQSPEEKRLIAKKKSAQATLSGSPGPFVVPPKKVHHFPEPTSTVE
KLGLKKKPRRAAELSQRSHDVLAQLRSHGKTAGQLPEKSRKTKLIEPRRMVIRSKVLLAS
QERQFFRQSRSKKKEKGEDVPRAKKKTFSKSPEESTGKKSDSLKGKPNQTSSSSNHPKKL
LPQHSQKDNGSDSGALEREALPSSRQETIMTDSDVPGCSTSAPGSVCSSNEVGGANSGSS
SKNLSEDASGLKEDLDPEENEDDLFLTQRDVVDMELCSQMESSSSPKDLGVHPTLQDQPQ
AVEKCRHLGCPLKTEGAGPFCHGHSLPNPTDHVFAKPSTKKIFSSSASSRIASLTKDLET
SSVQVASAKTISNPIRFAALKADEVRAKLTLANLLCPRNGNNFSTQPHSVPNSHVVGIAN
KMPIPRFNTGQEAHPSFAQLNSSHNQPRDHSIFTKEILKWSHDMFANFKKFGPPNHLLQA
VVIVVPVKFQNYDDYFKIFFPLMMLNAFEEVTCEWLENQKLREPKSFHLTLLNFNMDLNK
ADFTANISQHEIETQQHPKEDDVVFLIVSEKRFYYDERDGENRVVRHVGFVTRFSQSPIH
NAKKKEQQVTCHLSIQTQGNLLRIEKEVKCMVVSSLATTHRRFQALLMLNRSPLATPILS
PSTPYFSPRDLNTEPEKSLPYMKDFNEGQRRAIESAYAMITQHPSSPKICLIHGPPGTGK
SKVIVGLLHRILGERSGKENSVQRLNAKIKTNRVLVCAPSNAAIDNLMKKIILGFKKFRE
KNALGNCGDINLVRLGQLKSINSEVRKFSLDDQIDRKINKAMLGKDQDLQKKKEDLDRRL
DALSRLRAMDRSEKGEKKQQLEDEICQLSKERQRLASQLKEARGRSQELKASIILESHII
CCTLSTSGGVLLKSAFRRLGGDPVSCVIVDEAGQTCEVETLIPLIHGCKKLVLVGDPRQL
PPTIKSLKAQDYKFDQSMIGRLCNHLKEQDQENLSGKFPVLQLTVQYRMHPDICFFPSKY
IYEGILTTDTKIAEDRCSLAWPFQPYLLFDVLDSHEERENESYCNPQEVKLLVELMKVLK
GKKKDISARQIGIITPYNAQKRRIQRQLDKEFGENGVGEIDTVDGFQGREKDCIIVTCVR
ANSPQGSIGFLRSLQRLNVTITRAKYSLFILGKLKTLMENRDWNEMIQDAQRRGNIIQTS
KNTYKASAMKILKSRPFPHSGMATLERDAQEAPTALGRAKPQPLPSPDTTQRPPVSLPTP
AGKRTPQETPNHRPPPVAQERPQDPRLFRRAESGLKATGCKEGQTPASRPCPTQKPSGPL
TVQSRSNSVNTLGETPSCVRPVPSRAPSPSPVTLDRRFPFLNEQVKTLKDRPNYPRRTLE
VSREKDDSTEPKKRRTTF
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatgttgctggtgtacgccaggtggtcccaccaccgtcaagctgctagcgaat
tacgcctctgctaccctgtctccgaatgatgtttctgcagccaacgatgacctctgttac
tgcctggaatgcgtggaggagtaccacaaagcgagagatgaggtcccatctttgcaccag
atcctgtgggattgggaagtttcccgcctcgttaaccactttgagaagtccatgcgggag
gaggacgaaaacgacctctacttggtggaggaagaccgagtcactccgttgacttcctgt
tacacgtttgagaaacgtctccgggtgcctttgctggaagtcctgaagtatccctacctg
ctacttcatgaacacctcagcgagctgtgcgtagatgctctctgcaaaatggaggaaatg
aactactcctaccaagtagttggcaaacaccctggtatctatttactcatggtgcacccc
aatgaaacgatccgccggtgggccatcctgaccgcgaggaacctgggcaaagtcgaccga
gatgattattacgacatccaagaagtgctgatctgtttgttcaaagtggtagaactgggc
ctcttcgaaaacccggatatctacagctcatcgggggttgagaaaaccaggctggtcttg
ttgcctccccatctgtacgacaccagcaattacaagaactattggctggggctctgtatg
ctgctctcggtgctggaagaacaagcgatggattcgttgctgctggggccagacaaacag
aatttcatgcagtccatcatgaacaccatgagaaagcagacagatggtgaaatccatgac
cccttttggcccgtcctccactgtttcatggtgatcctggataagttggggtccaaagtg
tggggtcagttggtggatcccgtccaggcgttccagacgatcatcaataacgcgagctat
aagaaggaaatagagagtattcgacaaaactgccccagaacaaaatcagaaccaccatct
gactacggggatggaacaattacctgcagccagattgtgtataactacaacccagaaagg
ccccacaaggactcaagattgaagactactgcttgcttggactactgtcccaacttttat
gaagaaatgcagaccctgaccgacatgttccagtacgacatcgggcgggacatgcgtttg
catcacagcactttcctctggttcattccttttgtccattccctgatggacctcacgggg
ctgggcgtcgcctacagcatggtggtcatccagcacctgtgttccgaagtcaaggaggtc
ctccaccatgccgtccaaccttgtgacaaagtgtctcagtttttcatctggatccttgtg
acggtggtagagctcagctggaagaagaaatgcttcaacactttgtgggtcagctctcaa
aactgggtggaggtggtggtgacgtgcgccgggcttccaagtatggcgttcgccagtgga
gctgagagggacttggccagaaatggacccagaagtctcacaaaagtatcatcatgggaa
ccagattctatacagtctgtttgcatgaatttgatccgagttctcctaaaggaaggctac
cagatggggcagaaggcctccccgtttctgaacgaactgaatttgcttcggcgtagtcat
gaagactggaagctgagccctcaacaggcgcgagaattacagtcctgcttgattgagatc
atcagaagcctctggactaagtcatcgagcacttcctcccacagagagagtccgaccagc
ctcttcagagaacaagaggggagaagtccaggatatcttccccaagaacactccatctat
ccatcaccaagaaaacagggtgaaatttttcaagaaggaactttattcgagaaaaaatac
agcttggatgaggaagccaagggagccctttgtggagagcaaagccatcagagaaattca
gagttcaatttgaccaatgttaagcaggaacataaagagagtttaatacatgaggaacac
atgttgcattctacctcaacagggggacctacccagaagagtggaagcttctactcgaca
ctggggaaccagaatagctccccaaaccagagcagttttgacaaagactttcagaagata
gacaccagtgggaaggaagagaagcccagaattaccaaccctgatctccaccaacggccc
agcagttctgctctggaagaaaaacagattccaaaaatgatcgccgagaagcttaagtca
aacaaagcggacttgactttgaaattgaaacagtttgtggagaataggaaaaggctgctg
gggccggagagcgaaaagcagcagtccatcaaggaggagaaccaggatggtcaggaagga
acatcgagaagaacgtcaagagatggtagcagcacgtccagttgtctgccctgcaaacca
gcgctaagtttggagaaccaagccaaaatcctttccataaagaaggaacccagagacagt
ttggcagaattcaagagcgcttggaaaagtgggagagatgcagaagaaagtagcacagat
gatgagctgaatgtccccttgacggagatcaggaaggagctggtgagaaagaaatcgatg
gtccaagcgatggagcctgacgtagacagagagggtaaattgtatttagctgctcgtcaa
gaaagtactttggcttaccagaatcctattcaaagaaaagtccaaggggcatttaggtct
ccatctgagagcaaaagtcaaacattgtcctctgaagcaggtggaccttcaaaccaggtc
atcatcatttcagacacgtcttccgacgaagaagagaacaaagtgaacttgagccggagg
agccaagaagaaaacatgagtgagtcccttcagaaggacctcgagcccaacaaacaagag
gtcataaccgtttccagttctccattgatgtacggggaatgtgaatcgcagtgctttgag
tttgaaatcgaagacgagatctactccgcttggcaagacagccagttggacaagacggcg
gaggcagatgatgttccagggaagtcagctggcaggtccgcctcgcctgacttggagttg
gctaggcaccttagcgagcggggagatgatacagacggtcttggggacgacgttatcgaa
aaagccgagcaagaactggaagagcaggtgaaagtcggtaaaaccaagccgaaacttcct
gcccaggccgacgaagaaaatgtcagtgagggaagtacctctgtttgttcaaagcatttc
acagccacgcacgacgatggtcagaagtctcccagacagagttcagctttagcttcccct
atgccactatcgccatcatcatctgctggacttttgacaccatctctggaaccgactcct
gaaccaaggaagagtttggccaaatccaagtggctcaacacagctccacagagtcctgag
gaaaaaaggctcatcgccaaaaagaaatcggcccaggcaacgctgtctggatcgcctggt
ccttttgtggtccctcccaagaaagtccaccattttcccgagccgacgtccaccgtcgaa
aagctgggcctgaagaagaaacctcgcagagccgcagagctttcccaacgttctcacgac
gtcctcgcgcagttgcgcagccatggcaaaacagctgggcagcttcccgaaaagagcaga
aaaaccaaactgattgaacctcgacggatggttatccggagcaaagtgttgttggccagc
caagaacgccagttcttcagacagtcaagatccaagaagaaggagaaaggggaggatgtt
cccagagccaagaagaagactttttccaagtcacctgaggagtctactggtaagaagagt
gacagtctaaaaggaaagcctaaccagaccagcagttcttctaaccacccaaagaaattg
ctgccgcagcattcacaaaaggataatgggtccgattctggagctctggagagagaggcc
cttccatcatcaaggcaggagactatcatgaccgattcagatgtcccagggtgttccacc
tctgctccggggagtgtctgctcttcgaatgaagttggtggggccaactcgggttcctct
tccaagaacttgagtgaggatgcgtctggcttaaaggaggaccttgacccagaagagaat
gaggatgacttgttcctaacgcagagagatgtggtggacatggagctttgctcacaaatg
gaaagtagcagttccccaaaagacttaggtgtccacccaaccttgcaggatcagcctcag
gccgttgagaaatgcaggcatctcggatgtcctctaaagacagaaggagcaggtcccttc
tgccatggtcattctctgcctaaccctacagatcacgtctttgccaagccttccacgaag
aaaatcttcagctccagtgcttcttctcggattgccagccttaccaaagacctcgagacc
agctctgtgcaggtcgcatcggcgaaaaccatatccaacccaatccgctttgctgccttg
aaggcagatgaagtgagggccaagctaactctggccaatctcctttgccctaggaatggg
aataacttctccacacagccccacagtgtcccaaacagtcatgttgttggtattgccaac
aagatgcccattccacgcttcaacactggtcaggaagcacacccatcctttgcccaactc
aacagttctcacaaccagcctagagaccatagcattttcaccaaagaaatcctgaagtgg
agtcacgatatgtttgccaacttcaagaagttcggaccacccaaccatctcttgcaggca
gttgttatcgtcgttccggtcaagtttcagaactacgatgactattttaagattttcttc
cctttgatgatgctcaacgcctttgaagaggtcacgtgtgaatggctagagaatcagaag
ctaagagagccgaagtcttttcatttgactttgctgaatttcaacatggacttaaacaaa
gcagatttcacagctaacatttcccagcatgaaatagaaactcagcaacatcccaaagaa
gacgacgtggttttcctaatagtatctgagaaacggttctactacgatgaacgagacggg
gaaaaccgtgtggtccggcatgttggtttcgtgactcgtttctctcagtctcccattcat
aatgctaaaaagaaggagcaacaggtcacctgtcacctctccatccagactcaaggaaat
ctcttgcgcatcgagaaagaagtgaaatgcatggtggtcagctccttagcgacaacccac
cggaggttccaggccctcttgatgctgaatcgcagcccgttagccacgcccatcctgtct
ccaagtaccccctacttctccccgagagatttgaacaccgagcctgagaaatcgcttcct
tacatgaaggacttcaatgaagggcagaggcgagctattgaaagtgcttatgccatgata
acccagcatccatcatcacccaagatctgcttaatccatggaccacctgggacggggaag
tcgaaggtgatcgttggacttctccaccgcatccttggtgagagatcaggaaaggagaat
tccgtccagaggctgaacgccaagatcaagacgaaccgcgtgttggtttgtgccccttcc
aacgcagccatcgataacctcatgaaaaaaataattttgggattcaaaaaattccgagag
aaaaacgctttagggaattgcggtgacatcaacctggtccgtctaggacaactgaaatcg
atcaacagcgaagtccggaaattcagcttggatgatcagattgatcgcaagatcaataag
gccatgcttggtaaagatcaagacctccaaaagaagaaggaagatttagatcgacggtta
gacgcgctttctcgtctgcgggccatggacagaagcgagaagggggagaagaaacaacaa
ttggaggatgaaatttgccagctctcgaaggagaggcaacgcttggcttctcaactcaaa
gaggctcgcgggcgatctcaggaattgaaagcaagcatcattttagaatctcatatcatt
tgctgcaccctgagcacgagcggaggggtgttgctgaaatcggctttccggaggttgggc
ggggaccccgtcagctgcgtgattgtggacgaggcaggacagacgtgtgaagtcgaaaca
ctcatccctttgattcacggctgtaagaagctggttctggtcggcgaccccagacagctg
cctcccaccatcaagtccctgaaagctcaggattacaaattcgaccagtctatgatcggc
cgtctctgcaaccatctcaaggaacaagatcaagaaaatctctcgggaaaatttccggtc
cttcagctcaccgttcagtatcggatgcacccggatatctgcttttttccgtccaaatat
atctacgaagggatcttgaccactgacacgaaaatagcagaagatcgctgctcgttggcg
tggcctttccaaccctacttgcttttcgatgtcttagacagccacgaagaacgagaaaac
gaatcctattgtaacccccaagaagtgaagctgttggtggaactcatgaaggtccttaaa
ggaaagaagaaggatatcagcgcgcgtcaaattggaatcatcactccttacaacgcgcag
aaaaggaggatacagagacagctggataaagaatttggagaaaacggtgttggggaaatt
gacaccgtggacggattccaaggccgcgagaaagattgcattattgtcacctgcgtgcgg
gcaaacagccctcaaggatcgattgggtttctgagaagcctacagcgcctgaatgtcacc
atcacccgagccaaatacagccttttcattcttgggaagctgaaaacgctcatggagaac
agggactggaacgagatgatccaggacgcccaacggagagggaacatcatccagacctcc
aagaacacttacaaagccagcgccatgaaaatcctcaaatccagacctttcccccactcc
ggaatggcaactctagaaagagacgcccaagaagccccgacagccctcggcagagccaaa
ccacagcccctccccagcccagacaccactcaacgccctccggtctcccttcccactccg
gctggcaaaaggacccctcaagagacacccaaccaccggccacccccggtggcccaggag
agaccgcaggacccccgcctcttcagacgagcggagtcggggttaaaagccaccggctgc
aaggagggtcagactccggcctcgagaccctgcccaacgcaaaaaccctccggacctctg
accgttcagagccgtagcaattccgtgaacaccttgggggaaacgccgagctgcgttagg
cccgtgccgagcagagccccctccccctcccccgtgaccttggaccggagattcccgttc
ctgaacgagcaagtcaagactttgaaagaccgccccaattatccccggaggacattggag
gtgtcccgggagaaggacgactctaccgaacccaagaagagacgcaccactttctga
DBGET
integrated database retrieval system
