Pantherophis guttatus (corn snake): 117661584
Help
Entry
117661584 CDS
T07329
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
pgut
Pantherophis guttatus (corn snake)
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgut03036
]
117661584 (SHOC1)
Chromosome and associated proteins [BR:
pgut03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117661584 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
117661584
NCBI-ProteinID:
XP_034266473
UniProt:
A0A6P9B692
LinkDB
All DBs
Position
Unknown
AA seq
1526 aa
AA seq
DB search
MYHKMRNTMFSPVKFHAIDYSYEKLAKERITFQLLSIHFPFSLYQDIHYYHDGKLADNKY
RRPWTRASADSTVMNISVADIWKKCLFTEDFLEKKPVSNIAFHTPNEDVEIIPSSNPSSQ
ISTQDYMLMKLDKGELTDRHRLQVDYVPVALKQEGLYIEEELVFTNNLTQSGKSLPSLQT
LLSRLNVFQVQDPLLNFKGDSFMEEDILRECFTFKMSVTPQEKGMESSEDFCKVCLKDEE
IPLFLVKFQFCEATNSKVDMEILTCLALKSLLQVTPEILEDENEYLRITNEKFNMTIIPE
MIKSSEHYSTQEVYSSQNKDLSEFNNPISYNGELEVPLTPPCRKENMCMNSLYVHLKPEP
VSPINKSDFITESTSNYLEGLMWQSEKYQNAMSSLFLIVPQNSVAVCQKFSVIELRTKLS
IHENSMTTGSLEEDEWINLRENLTVPCVLEALSVNVNDEGRLANTDVEDYSKVTNFQLDE
WLDDKSSFCDCNVKNFSIPHCIGTKDSCSPKKNETFSSLSLTPTSPQYSISIADNNVSTE
NYIKQTKLQNEIEKPVQIENHEVGKNNQIVSCKKVSISANSRLRNKKSVLPEQPRKCKDD
FDLLSNFIMLRSKQVISQRKEGNDMDIQEEVFDAEDEQPSNESHKSPGVPGMTIPMENQS
KDNHTLAFLKIKTSERQSQAYHILEAAAAPVLKELIKLDMQNWRFATLNSDNSRFFLKQQ
EKVISDTLKQGSKDAKYILVFRHAAILHLLVTVRDLLLTCNLNTALEYLSKAKDNYKDFQ
DYDLDIIWKQLKIVEIVVQEQKVSPKMTELQHQIAKWVQNNANDQNKVVIVIRMDFDEET
EVLINTINTVQGLKAIYLSSKKRGMLLESKHIINSLDIYSCIVIHNQHIGPDFPWTNFSL
VIEYNYNENSCWIDLCKKMNISYLIFQTAPPEAIETEEFLPDNLGYDLLKLSIPYVFLTS
EGLLNTPEILQLLESKYNITLIERNCCEALNYFGGTEHYVVMTIDECTAIVMQNMEELNY
ENSSDNIVLRLMALSLQYVSCWIILYSRERLNSKYSLTGKTLHHLALIYAALISFAQKSE
DFEVKMALTPGVEETALLVRQIADHILLASKQHPQEWLNKSWLSVLPLEAEKCLLTFPCM
NPLVAQVMLKKNSSLEWLLGASFAELQELLPEVPEKVLKNFSDITSLYNLKPLIRPGTQK
ESISLQGNINSAICSCSQLPFPEALFSRLQGHSSCTEYSECFLEEWNKNCSQNGSCGCLK
STGEFNLVVPSISYEGDTCPFQENVGVERQLYLPFLKKVETETRINASHLTLNIGEPSHV
NNETTMPHLHCNQDISSYIENCPLNRMTVSKVDTGKQLDISEFLKKPIYHDAKNEHLGKI
QPLVQQLNSFHDFKHSSHVISSRKNVLFQENSGSVLEIGRKASSSPALQSEERFWGNPPF
IQAMDSSPYDSREGKAIASPDRFMNLGIQFTGDYTRGKGHNSLSGEQRQQDVSGLEFMQL
PQLKKRRLTFEKDPRRHDGQTRLKFF
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgtatcacaaaatgagaaatactatgttttcacctgtgaagttccatgcaatcgactat
tcttacgagaaactggcaaaagagagaattacctttcagttgttatcaattcacttccct
tttagtttatatcaggatatacattactatcatgatggaaaattggctgataataaatat
agaagaccctggacaagagcttcagctgattccactgtgatgaatatttcagtagctgat
atttggaaaaaatgtctcttcactgaagatttcttagaaaagaagcctgtttcaaatatt
gccttccatacccctaatgaagatgttgaaattattccaagttcaaatccttcttctcaa
atcagtacacaagattatatgcttatgaaacttgacaagggagaactgactgatagacat
cgcttgcaggtggattatgttccagttgcacttaaacaagaaggtttatatattgaagaa
gaacttgttttcactaataatttgacacagtctggtaaatctctaccttctctacaaaca
ctcctgagtcgactaaatgttttccaagtgcaagatccccttttaaattttaaaggtgac
agtttcatggaagaggacatattgagggagtgctttactttcaaaatgagtgtgacacct
caagaaaaagggatggaatcaagtgaagatttctgcaaagtttgtttaaaggatgaagag
attcctttatttcttgttaagtttcaattctgtgaagcaacaaactcaaaggtggatatg
gagattctcacatgtttagcccttaaatctttattacaagtaactccagaaattttagaa
gatgaaaatgaatatctcagaataactaatgaaaaatttaacatgacaattataccagag
atgataaagagttcagaacattactctactcaagaagtttattctagtcagaacaaagat
ctatccgaattcaacaatccaataagttacaatggagaacttgaggtgccattaacccct
ccatgtaggaaagaaaatatgtgcatgaattcattgtatgtccacttaaaaccagaacct
gtttctcccattaataaaagtgatttcattacagaatctacttcaaattatttggaaggg
cttatgtggcagtcagagaaataccagaatgctatgtcttcacttttcctaatagtacct
cagaattctgttgctgtatgtcaaaagttttcagtcatagaactgaggacaaagttgtca
atacatgaaaattccatgactaccggaagcttggaagaagatgagtggattaatttaaga
gaaaacctgaccgtgccatgtgttttagaagcactgagcgtaaatgtaaatgatgaagga
agacttgctaatacagatgttgaagattattccaaagttactaatttccagttagatgaa
tggcttgatgacaagagttccttctgtgattgcaacgtgaagaattttagtatccctcat
tgtattgggaccaaggattcttgttctcctaaaaaaaatgagactttttcttcactatct
ctgacacctacttcaccacagtatagtatctctatagcagacaacaatgtatctactgaa
aattatatcaaacaaaccaaattacaaaatgaaattgaaaagccagtgcagattgaaaat
catgaagtaggaaaaaacaatcaaatagtcagttgcaagaaagtctctatctcagcaaat
agtagattaagaaataaaaagtcagttctacctgaacagcctagaaaatgcaaagatgac
tttgatcttttgagtaattttatcatgctgcgatctaaacaggtgatcagtcaaagaaaa
gaaggaaatgatatggatattcaagaagaagtatttgatgctgaggacgaacaaccttca
aatgaaagccacaaaagtcctggggttcctggcatgacaattcctatggaaaaccaatca
aaagacaatcatacattagctttcctcaaaattaaaacatcagagcgtcagtctcaggca
tatcatatcctagaagctgcagcggctccagttttgaaagaacttataaagcttgacatg
cagaattggaggtttgccacacttaattctgataacagcagattttttttaaaacaacaa
gagaaagtgatcagtgacacattgaaacaaggtagcaaagatgcaaaatatattttggta
ttcagacatgctgctattcttcatttgctggttacagttcgtgatcttttattaacctgt
aacttgaacactgcattagaatatctgtccaaggcaaaagacaattataaagatttccaa
gactatgacctggatattatttggaaacagctgaaaattgtggaaattgttgtgcaggag
cagaaagtcagtcccaaaatgacagaattacagcatcaaattgctaagtgggtacagaat
aatgcaaatgatcagaataaggtagtaattgtgattagaatggattttgatgaagaaaca
gaagtcctaatcaataccattaatacagtgcaaggcttgaaggccatatatttgagttct
aagaaaagaggaatgttgttagagagtaaacatataataaatagtttggacatatattct
tgtatcgttatacataatcaacatattgggcctgatttcccctggaccaatttttcattg
gtgatcgagtacaactacaatgagaattcctgttggattgatctatgcaaaaaaatgaat
atatcgtacttaattttccaaacagctcccccggaagcaattgaaactgaagagtttttg
ccagataatcttggatatgatcttctgaagttgtcaattccttatgttttcttgacatct
gaaggacttctcaataccccagaaatccttcaattactagaatccaagtataatattact
ttaattgaaagaaactgctgtgaggccttaaactattttggaggcacagaacattatgtg
gtgatgactatagatgaatgcacagctattgttatgcagaacatggaagaactcaattat
gaaaactcctctgataatattgtcttaagactgatggcgctatcactccagtatgtctcc
tgttggattattttatactccagagaaagattaaattctaaatatagtctaactggaaaa
actctgcatcatcttgctttgatttatgcagcattgatttcttttgctcagaagtcagaa
gactttgaagtgaagatggcccttacaccaggagttgaagaaacagcacttttggttcgc
caaatagctgaccatatattattggcgtctaaacaacatcctcaggagtggttaaacaag
tcatggctttctgtcctgccattagaagcagagaaatgcttgcttacatttccatgcatg
aatccactagttgctcaagtcatgctaaagaaaaattcttcattggaatggctcctggga
gcatcgtttgctgagcttcaggaacttctgcctgaggtgccagaaaaggttttgaagaat
tttagtgatatcacatcattatacaacctcaagccactaataagaccaggaacacaaaaa
gaatccatatctcttcaaggaaatattaattctgccatctgctcttgttctcaacttcca
tttccggaggctttgttctccagattgcaaggacatagttcctgtactgagtattcagaa
tgctttctcgaagaatggaacaaaaactgttcccagaatggatcttgtggttgtctgaaa
tcaactggagaatttaacttagttgtaccttcaatatcgtatgaaggagacacctgtccc
tttcaggagaatgtaggggtagagaggcaactttatctcccatttctgaaaaaagtggaa
acagaaacaagaataaatgcatcacatttaacactgaacattggggaaccttcccatgtc
aataatgaaaccacaatgccacatttgcactgtaaccaggacattagctcttatattgag
aattgtccactgaatagaatgactgtttcaaaagtggacacaggcaaacagctagatatc
tctgagttcttgaagaagcctatctatcatgatgctaaaaatgaacatctgggaaaaatt
caacctctcgtgcaacaactgaattctttccatgatttcaagcattcttctcatgtcatt
tctagtcgaaaaaatgttctgttccaggaaaactccggcagtgttttagaaataggaaga
aaagcaagcagcagtcctgcattacaatctgaggaaagattttggggtaaccccccattc
atacaagcaatggattcttctccctatgattcacgtgaaggcaaagctatagccagtcca
gataggttcatgaatttgggcattcagtttactggagattataccagagggaaaggacat
aattcattatcaggtgaacaaagacaacaagatgtttcaggtttagaatttatgcaatta
ccacagcttaaaaaaaggcgtctaacttttgaaaaagatcctaggagacatgatggccaa
acacgtctcaaatttttttag
DBGET
integrated database retrieval system
