KEGG   Pantherophis guttatus (corn snake): 117663531
Entry
117663531         CDS       T07329                                 
Symbol
SNRNP40
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pgut  Pantherophis guttatus (corn snake)
Pathway
pgut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pgut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117663531 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pgut03041]
    117663531 (SNRNP40)
Spliceosome [BR:pgut03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117663531 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    117663531 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Beta-prop_HPS5 Beta-prop_IFT140_2nd Cytochrom_D1 WD_LRWD1 WDR54 PROPPIN Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 117663531
NCBI-ProteinID: XP_060547517
LinkDB
Position
Unknown
AA seq 359 aa
MIDPQKRKAPGPDMALVAAAAAAKKPRHELILGPGPGAGQPPPGALLQAGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWHVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQXISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSAEGSYLLSNAMDNAVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIVLSASSDKRLYMGEIQ
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgatcgacccgcagaaacggaaggctcccgggccggatatggctctggtggcggcggcg
gctgctgctaaaaaaccccgccatgagctcatcttggggccgggtcccggagctgggcaa
ccgcctccgggcgccttgttgcaggcgggccccccaagatgttcctcattgcaagcaccc
ataatgttactttctggtcatgaaggagaggtttattgttgcaagtttcatcctaatgga
tccaccctagcctcagctgggtttgacaggttgatactcctatggcatgtgtatggtgac
tgtgataattatgccactttgaagggccacagtggcgcagttatggaactacattacaac
actgatggcagcatgctgttctcagcctccacggataaaacagtagcagtatgggatagt
gagacaggagagagagtgaaaagacttaaaggacacacttcgtttgtcaactcctgctat
ccagcaagacgtggacctcagttggtttgcacaggcagcgatgatgggacagtgaagctc
tgggacatcaggaagaaagcagctgttcagaccttccagaacacctatcaagtattagct
gtgaccttcaatgataccagtgatcaantaatatctggcggtatcgacaatgatatcaag
gtatgggaccttcgtcagaacaagctaacttacacaatgagaggacatgcggattctgtc
accggtctcagcctaagtgcagagggctcttacttgctttccaatgcaatggacaatgca
gttcgcatctgggatgtgcggccctttgctcccaaagaaagatgtgtgaagatactccaa
gggaacgtgcataattttgagaagaaccttttgcgatgttcctggtccccagatggaagt
aaaatagctgctggatctgcagacaggtttgtttatgtgtgggatacaacctctagaaga
atcctctacaaacttccaggccatgcgggttcgataaatgaagtggcatttcacccagaa
gaaccaatagtactttctgcgtctagcgacaaaagactgtatatgggagagatccagtga

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