Pantherophis guttatus (corn snake): 117667094
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Entry
117667094 CDS
T07329
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117667094 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117667094 (PATL1)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117667094 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
117667094 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117667094
NCBI-ProteinID:
XP_034276178
UniProt:
A0A6P9BWS6
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
MFRYQSLEDCPLDEDEEAFHNLAEEDEDIDQFNDDTFGTGAIDDDWQEAHERLAELEEKP
ASSTEQVDHRVTDEMDLLGDHEENLAERLSKMVIDNELEDPAIMQAVQTRPLIQQPGGLN
SSIWDGPSVLRRIRGPLLTQEVPSVSVLEYALPQRPSQSREEEQDVSERALPRRSCSPVI
GSPPVRAVPIGTPPKQPTMPNFNQQILCPKPVHIRVPIQQRYPSPFSERMSPNQLCSVTN
NSLLGHPFPPNVTPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLAPMNPKLLQGR
VGQMMPPAGGFRAFFGAAATPPSQHHSPCPGAHLQNLRPRPQMFRPDTTHLHPQHRRLLH
QRQQQNRNQHRNLNGSAGDRGNHRNNHQEQIRKDPYANLMLQREKDWVSKIQMMQLQSTD
PYLDDFYYQNYFQKLEKLSAAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKL
TVSSVNNPRKMIDAIVTLRGEEDETKEKQVRDKRRQTLFTIEKTYSLLLDVEDYERRYLL
SLEGDRLALMEERKQKICDIYDNLRGKVPNQERLSDDPFVQIMCIRKGKHLVARILPFLS
SEQAAEILMATARNLPFLIKKDAQDEVLPCLLRPFSLVLYHLPLGTVTSILQQLMNLPHS
ATVTTAANLHLTAVLQNKFGLSLLYLVLSRGEELQSSDSVTELTQDNQWTEVMIMAIREF
LRIPQAVLAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLIQGIR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtcccttgaggactgccctttagatgaagatgaagaagcctttcat
aatttggctgaggaagatgaggatatcgatcaattcaatgatgacacatttggaactggt
gcaattgacgatgactggcaggaagcacacgaaagactggctgagctggaagaaaagcct
gcatcctcaacagagcaagtggatcacagagttactgatgagatggacctgttgggtgat
catgaggaaaacctggcagagaggcttagcaaaatggtgattgataatgaattggaagat
ccagctattatgcaggctgtgcagactcggcctctgatacagcagccaggtggcctcaat
tcaagcatctgggatggaccctcagttttgaggcgcattcgaggaccactcctcactcag
gaagtgccctccgtatctgtgctggaatatgccctaccacagaggccttcgcagtcccga
gaagaggagcaagatgtctcagagcgagcactgcccaggcggtcatgctccccagttatt
ggcagtcctcctgttagggctgttcctattgggacgcctcctaagcagcctaccatgccc
aacttcaaccaacagatcctgtgtccgaagcctgtccacatcagagtcccaattcagcag
cgttatccaagtcccttcagtgagaggatgtctccaaaccagctctgcagtgtaacgaac
aactccctcttaggccatccgttccctcctaatgttactcctgttcttacccacctccag
agagcacagctactaggaggagcacaggcaggaaggatgtctcccagccagtttgcacgg
gtctctggtcttgttggcagccctcttgcacccatgaatccgaaactgctccagggccga
gtaggacagatgatgcctccagccggtggctttcgtgccttttttggggcagcagctacg
ccaccatcacaacaccattccccatgtcctggagctcacttgcagaatctacggcctcgg
ccacaaatgttcaggccagatacaactcaccttcatccacaacatcgacgactcttacac
cagagacagcagcagaacaggaatcaacacaggaatctaaatgggtcagcaggggaccga
gggaaccaccgaaataaccatcaagagcagatcaggaaggacccttatgctaatcttatg
ctgcaacgggagaaagattgggtatccaagatccaaatgatgcaactgcaaagcactgat
ccctatttggatgacttctactatcagaactattttcagaaactagaaaaattgtctgca
gctgaggagatgcatggtgacggtcctaaaaaggagcgtacaaaactaatcaccccacaa
gtggcaaagctagagcatgcctataaaccagtgcagtttgagggctcactagggaagctg
accgtatccagcgtgaacaacccccgcaaaatgatagatgctattgtgactttaagagga
gaggaagatgaaactaaggagaagcaggttcgagataaaaggcgccagactctcttcact
attgaaaaaacatatagcctcctcttggatgtagaagattatgaaagacgctaccttctg
agcttggagggggacaggttggccttgatggaggagagaaagcagaaaatctgtgacata
tatgacaatctgaggggaaaggtgcccaatcaagaaagacttagtgatgacccttttgtg
cagattatgtgtatacgtaaaggaaaacatctagttgcacggatcctacctttcttgtcc
agtgaacaagcagctgagatactaatggcaacagccaggaatttgccctttctaatcaag
aaagatgctcaagatgaggtgcttccctgtctcttgaggcccttttcccttgttctttat
catcttccattgggaactgttaccagcatcctacaacagctaatgaacctacctcacagt
gcaacagtgaccacagctgccaacctccacctcacagcagttcttcagaacaagtttggc
ctctctctgctatacttggtcttaagtcgaggagaggagttgcagagttcagattctgtc
acagaacttacacaagataatcagtggacggaagtgatgatcatggcaattagggagttt
cttcgaatccctcaggcggtcttggctaagccagtatctactccctctaatcttttatct
ctcttctctcgctatgttgatcaacaaaagctgaatgtgctagagacaaaattgcagttg
atccaaggaatacggtag
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integrated database retrieval system
