Pantherophis guttatus (corn snake): 117667854
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Entry
117667854 CDS
T07329
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117667854 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117667854 (SKIC2)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117667854 (SKIC2)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117667854 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
117667854 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
117667854
NCBI-ProteinID:
XP_034277358
UniProt:
A0A6P9BZP5
LinkDB
All DBs
Position
Unknown
AA seq
1272 aa
AA seq
DB search
MDLERIVIPPRGPLELPLSILEVGCAGRFELITQEEPTKEGFPLTTLPHGLPPYAEDLAS
ELEQHYLNSPEWLPIHDFERSHRFWPREKDVQSLFALEVTPVHSTLQAERNPTTGELLGF
KEALVDNTGLSAKNSLSFQRAPGPPSESLRGSATNYPFWPGGIDEPILELIKAQEDKEED
IDFEKDLLTVPPGWKKGVEFTKQEIMASPGLLNLTNLLGALDTFELEASSDEEGKEKAEE
VEKRRKKGKNKGAREEEIPPAEPAPLHRVNSLEELVLKEVTPIPESAPQAAPAPAAVPPK
EQWAILVDVSSPVDDFYKLIPDPAFQWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTV
VAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIMTT
EILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVPNT
LEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGYYD
AVDAKKDRTSKHSQTFGAKQPMHAGAGPGQDKNIWLSLIDMLRKKDQLPVVAFTFSRNRC
DENASMLTTIDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLLKRGIGVHHSGI
LPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRKHDGANFRDLVPAEYIQ
MAGRAGRRGLDTTGMVIILCKNQVPEMSDLHRMMLGKPTRLQSQFRLTYTMILNLLRVEA
LRVEDMMRRSFSEFHTRKDSKVYEHRIAQLSSMLANMEVPDTSRQLGDLQEYYSVVRELR
EIREHIQRRVMESMNGLKALSVGRVIVVSNQEHKNALGVILQVSSDAANRVFSTLVMCEK
NSMERDLAEGQELNRPPSAEVPLPEDLLHTKLFLPEGPCGHTIKKLGPADILGITTKTLR
VNAERILEDFRKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNDLQLKDLE
VVESIIRARGLEERLPEFQCVHSPLFHIEFVRFRERQRVLDELDQLRFLLSDQSLLLLPE
YHQRVEVLRSLGYINEGGAVELKGSVARQISNHELLLTQLLLDNALTDLRPEEIVALLSC
TVCQVRTQVEPQLPSVLQKGIEHIRSVAEQIALLQRKCGLQESIEDFVEQYKFGLVEVVY
EWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAARVTGEPTLHAKMEAASNMIK
RDIVFAASLYTQ
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggatctggagaggatagtcatccctccccggggacctttagagttgcctctttccatt
ttggaggttggatgtgctggtcgttttgagctcatcacccaagaggaacccaccaaagag
ggatttccactgaccacactgccacatgggctgcccccgtatgctgaagatctggcctcg
gaattggagcagcattatctcaacagcccagaatggcttcccatccatgactttgaaagg
tctcacaggttctggccccgagagaaggatgtccaatcactcttcgcactggaggtcaca
cctgtgcactccaccctccaggctgaacgcaatcccaccaccggggagctgctgggtttt
aaagaggcacttgtggacaacacgggattatcagccaagaattcgctttccttccagcga
gcgcctggccctccctccgagtctctgagaggcagtgccaccaactaccccttctggcca
ggtgggattgatgagccaatcttggaactgattaaggctcaggaagataaggaagaggac
attgattttgagaaagatttgctgacagtgccacctggatggaaaaaaggggtggaattc
accaaacaagagatcatggcctccccaggattgctgaatttgaccaatttgctgggtgca
ctagacaccttcgagctggaggcctccagtgatgaggaaggcaaagagaaggcagaggaa
gtggagaagaggaggaagaaagggaagaataagggagcaagggaagaagagatccctcca
gcagaaccagcaccactgcacagagtgaacagcttggaggaactggtgcttaaggaggtg
acacccatccccgaatcagccccacaggctgcccctgcccccgctgcagtgccccctaaa
gaacagtgggctatcctggtcgatgtaagctcccccgtggacgatttctacaagctaatt
cctgatccagccttccagtggccttttgagcccgacgttttccagaaacaggcaattctc
cacttggagaagcatgattcagtctttgtcgccgcccacacctctgcgggaaagactgtc
gtggctgagtacgccattgctctgtcgcagaagcacatgacacgcaccatctacacatcc
ccaatcaaagcgctttccaaccagaagtttcgggatttcaagaacacctttggggatgtt
ggcttgttgacaggagatgtgcagctgcatccggatgcctcctgcctcatcatgacaacc
gagattctcaggtctatgctctataatggctccgatgtcctcagagacctagagtgggtg
atctttgatgaagtgcattatattaatgattctgagcgcggtgtggtttgggaagaggtc
ctcatcatgttgccagaccacgtaaacataattttgctgagtgccaccgtccccaacacc
ctggagtttgctgactggattgggagaatcaagcggaagaagatttatgtgatcagcaca
ctgaagcgccctgttccactggagcattatctgtacacgggaaatagccagaagacgcag
aacgagctcttcctcctggtggacgcccgtgggacgttccttacaaaagggtattatgat
gctgtagatgccaaaaaggaccgaactagcaaacactcccagacctttggggccaaacag
ccaatgcatgcaggagccgggccaggccaggacaagaacatctggctctccctcattgac
atgctgcgcaagaaggaccagctgccggtggtggccttcacgttctctcgcaaccgctgc
gacgaaaacgcctccatgctgaccaccatcgacctgaccaccacgacggagaaaagcgag
atccacgtcttcttccagaagtgcatctcccgactgaagggtaccgatcggcagctgcct
caggttcttcacatggtcgaccttttgaaacgtgggattggggtgcaccacagtggcatt
ctgcccatcctcaaggaggttgtggagatgcttttcagcaaaggccttgtcaagatcctc
ttcgccacagagactttcgccatgggggtgaacatgccagcaaggactgtggttttcaat
tctgttcgtaaacatgacggtgctaatttccgggacttggtaccagccgaatacatccag
atggcaggccgggctggacgtcgaggtctcgacacaactgggatggtgattattctgtgc
aaaaaccaagtgcctgaaatgtccgaccttcaccgcatgatgttgggcaagcctactcgg
ttgcagtcccaattccgcctgacgtacaccatgatcctaaacctgttgagagtggaggca
ctccgagtggaagacatgatgaggagaagcttctccgagttccacacccggaaagacagc
aaggtctatgaacacagaatcgcccagctgagcagtatgttagccaacatggaagtgcca
gacacgtcaaggcagcttggggacttacaggagtattattctgtagtcagagaactgcga
gagatacgggagcacattcagagacgagtaatggaatcgatgaacggattgaaagccctt
tctgtgggacgagtgattgtggtgagcaaccaagagcacaaaaatgccctgggagtcatc
ttgcaggtttcttcagacgcagccaatcgggtcttcagcactttagtgatgtgtgagaag
aactccatggaacgggacctggctgaaggccaggagttgaatcgtcctccatctgctgag
gtgcctctgcccgaggatcttctccacacgaagctcttccttcctgaaggcccctgtgga
cacaccataaagaaactgggccccgcagatattctgggcatcacaacgaaaaccctccgt
gttaatgccgagcgtatcttggaggatttcaggaagcgacaaatgcccaggttcaggaac
gacccacctggaccgtcagcggccacagcaacccaggagctgctgcgtttagccgagggc
tctccggaaggcctcccccttctggatccagtgaacgaccttcagctgaaggatctggaa
gtcgtagagagcataatccgggcccgcggtctggaggaacgtttgccagagttccagtgt
gtccacagcccactctttcacatagagtttgtacgcttccgagagcgccagcgggtgttg
gacgaactggaccagctgcgcttcctgctgtcggaccagtcccttctcttactgcctgag
tatcaccagcgtgtcgaagtcttgcgttccctgggctacatcaacgaaggaggagccgtg
gagctcaaggggagcgtggcccgtcagatcagcaaccatgagctgctcctgacgcagctg
cttctggacaatgccctgaccgacctgcggcccgaggagatcgtggccttgctgagctgc
acggtgtgccaggtccgcacccaggtggagcctcagctgccctctgtccttcagaagggc
atagagcacatccgctcggtagccgaacagatcgccctgctgcagcgcaagtgcggcctg
caagaatcgatcgaggattttgtggagcagtacaaattcgggctggtggaagtggtttac
gaatgggcccgtggcatgccctttgccgagatcgcccgcctgaccgacgtgcaggaaggc
attatcgtccgctgcattcagcgcctggatgaaacctgtcgcgagatgcgcaacgctgcc
cgggtgacgggggagccgaccctgcacgccaagatggaagcggcctccaacatgatcaag
agagacattgtctttgccgctagcctctacacccagtga
DBGET
integrated database retrieval system
