Pantherophis guttatus (corn snake): 117668307
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Entry
117668307 CDS
T07329
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03013
Nucleocytoplasmic transport
pgut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117668307 (UPF2)
03015 mRNA surveillance pathway
117668307 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117668307 (UPF2)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117668307 (UPF2)
mRNA cycle factors
P-body specific factors
117668307 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
pPIWI_RE_Y
Motif
Other DBs
NCBI-GeneID:
117668307
NCBI-ProteinID:
XP_034277995
UniProt:
A0A6P9CDV5
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MPAERKKSASMEEKETSLSNKEKEFGERRSVSSRDRPKEDVRLGMKREMLKPPEDKKKKM
EEEKRKKDEKEWKKKEDEKIKSEEEQKRKEEEEKQKLEEEEKKKQEEEMKLQQEEAAAKL
KEKEEAHQLHQEAWERHQARKELRSKNQNASESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRET
HTHVSVVISFCRHCGDDIAGLVPRKVKSAADKFNLSFPPSEIISAEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPVPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQAKDSGRDDSRELKENKENKDISGTEDLELELENLDINDETLDLDCGEEAE
DLTKKLLDEQGKKQGADSTGAENSDGKQAARKQEDEETSTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDHEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTLFGVNSDGTSSLLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHLFPIDIDYMISDTLELLRPKIKLCNSLEESVRQV
QELEREFLIKLGLMNDKDSKDSMTEGENLEEDEDEEEGGVEIEEQSGNESEINEPEEEEG
SENDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcggaagaagtcagctagcatggaagaaaaggaaacatcattaagtaac
aaagagaaggagtttggtgagaggcggtcagtgagcagccgggacagacccaaggaggat
gtcaggctgggcatgaagagagagatgctcaagccacccgaagataaaaagaagaaaatg
gaggaggagaagcggaaaaaggacgagaaggaatggaagaagaaagaggacgagaagata
aaatcggaggaggaacaaaagagaaaggaggaggaggagaagcaaaagcttgaagaggaa
gagaagaagaagcaagaggaagagatgaagctgcagcaggaagaagcagctgccaagttg
aaagagaaagaagaagctcaccagctgcatcaggaagcttgggagcgccaccaagcccgg
aaggagctgcgaagcaaaaaccagaacgcctcggaaagccgcccggaagagaatttcttc
agcaggctggactccagcctgaagaagaacacggccttcgtgaagaagctcaagaccatc
accgagcagcagagggactccttgtcccacgacttcaacggcctcaacctgagcaagtac
atcgccgaggccgtggcctccatcgtggaagccaagctgaagatctcggacgtgaactgc
gcggtgcacctctgctccctctttcaccagcgctacgccgacttcgctccctcgctgctc
caggtctggaagaagcatttcgaagccaggaaagaagagaagacgcccaacatcaccaag
ctgcggaccgacctgcggttcatcgccgagctgaccatcgtcgggattttcaccgacaag
gagggcctgtccctcatctacgagcagctgaagagcatcatcaacgccgaccgcgagact
cacacccacgtttccgtggtcatcagtttctgccggcactgcggcgacgacatcgcgggc
ttggtacccaggaaggtgaaaagcgcggcggataaattcaacctgagctttccccccagc
gagatcatcagcgcggagaagcagcagcctttccaaaacctgctgaaggaatatttcacc
tcgctgaccaagcacctgaaaagggaccacagggaactgcaaaacattgaaaggcaaaac
aggcgtattctgcattctaaaggggaattgagcgaagaccggcataaacaatatgaagaa
tttgctatgtcttatcagaagctgttggcaaactctcagtctttagcagacctcctggat
gaaaacatgccagatctccctcaagacaaacctgtgccagaagaacacggtccgggaatt
gatatttttacccctggcaaacctggggaatatgatttggaggggggaatctgggaagac
gaagatgccaggaacttctacgagaacctgattgatttaaaagcgtttgtgccggctatc
ttgtttaaagacaatgaaaagtgctctcaggccaaagattctgggagggacgactccaga
gaactaaaagaaaataaagaaaataaagatatatccggcactgaagacctagaactggaa
ctggaaaacttggatattaatgatgagaccctggatctagattgtggggaggaagcagag
gatctcacaaaaaaacttcttgacgaacaaggcaagaaacagggagcagatagcaccgga
gctgaaaatagtgacggaaagcaagctgcaagaaaacaagaagatgaagaaacgagcacc
ggatcacacctaaaacttatagtagatgcttttcttcagcagctcccaaattgtgtaaat
agagacctcatagacaaggcagccatggatttttgcatgaatatgaacaccaaggctaac
cgaaggaaattagtcagggcccttttcatcgttcctcggcagaggctggatttgctgcct
ttctatgcacggctggttggtactttgcacccctgtatgtccgacgtagcagaagacctc
tgctccatgttgaagggggacttcagatttcacgtgagaaagaaggaccagatcaacatc
gagacgaagaacaaaaccgtgaggttcattggcgagctaactaagtttaagatgttctcc
aaaagtgacacgctgcattgcttgaagatgctcctgtccgacttctcccatcaccatatc
gagatggcctgcactctgctggagacctgtggcagattcctcttcaggtctccggactcc
catttgaggaccagcgttctcttggagcaaatgatgcgtaagaaacaagcaatgcacctt
gacgcgcgctacgtcacgatggtggaaaacgcctactactattgtaaccctcccccagcg
gagaaaacggtgaaaaagaaacggcctcccctccaggaatacatccggaagctgctctat
aaggatctctccaaagtcaccactgaaaaggtcctgagacaaatgcgcaaactgccttgg
catgaccacgaggtgaaagattacgtgatctgctgtatgatcaacatttggaatgtgaaa
tataacagcattcactgtgtagccaaccttctggcaggactggtcctttaccaagaggac
gttgggattcacgtggtggacggagttctagaggatattcgattagggatggaggttaat
cagcccaaattcaatcagcggaggatcagcagcgctaagttcctcggcgagctgtacaac
tacagaatggtcgaatcggcggtcatctttcggactctgtactcgttcacgttgttcggg
gtgaactccgacggcacgtcgagtctcctggacccccccgaacaccttttccgaatcaga
ctggtctgcaccatcctggacacctgcgggcagtacttcgacaggggatccagcaagcga
aaactggactgcttcttggtctactttcagaggtatgtttggtggaagaaaagcttggac
gtatggacaaaggatcacctcttccctatagacattgactatatgatcagcgatacgtta
gaactgctgagaccgaaaataaaactttgcaattctctggaagaatccgtgaggcaggta
caagaactggaaagggaattcttaatcaaactaggtcttatgaacgacaaagactctaag
gattccatgactgaaggagagaacctggaggaggatgaggacgaagaggaaggtggggta
gagatcgaagaacaatctggaaatgaaagcgaaataaacgagccagaggaggaggagggg
tcggagaatgatgatgacgaaggagaagaggaagaagaagaaaataccgattatctcact
gactctaataaggagaacgaaacggatgaagagaacacggaagtaatgattaaaggaggc
gggctgaaacgggtcccctgcgcggaagatgaagattttattcaggcattggataaaatg
atgctggaaaatttacagcaaagaagcggagagtcggtgaaagtgcaccagttggacgtg
gccatccctttgcacctcaagagccagctgaagaaaggacctcccctcgggggcggggag
ggggagtctgaatccggagacaccatgcctttcgtcatgctgacgcggaaaggcaacaag
cagcagtttaaaatcctaaacgtgccgatgtcctctcaactggccgcgaaccactggaac
cagcagcaggccgagcaggaagagcgtatgcggatgaaaaagctaaccttggacatcaat
gaacggcaggaacaggaggactatcaagaaatgatgcaatccttggctcagcggccggct
ccagcaaatacaaaccgagaacggcgacctcggtaccagcatcctaagggagcccctaat
gctgatctcatctttaaaactggtggaaggagacgttga
DBGET
integrated database retrieval system
