Pantherophis guttatus (corn snake): 117670199
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Entry
117670199 CDS
T07329
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117670199 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117670199 (DDX6)
03036 Chromosome and associated proteins [BR:
pgut03036
]
117670199 (DDX6)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117670199 (DDX6)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117670199 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
117670199 (DDX6)
Chromosome and associated proteins [BR:
pgut03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117670199 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117670199
NCBI-ProteinID:
XP_034281070
UniProt:
A0A6P9CMF8
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPGGGPGSGGTQVQQQINQLKHPNTINNGTQQQAQ
SMASTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHI
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
DKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccagaacagagaaccctgttataatgggtctctccagtcaaaatggacag
ctgaggggcccagtaaaacctggtggtggtccaggaagcggggggacacaggttcagcaa
cagataaaccagctgaaacatcccaacacaatcaacaatggcactcagcagcaagcacag
agcatggcctccactatcaaacctggcgatgactggaagaagactttaaagctccctccg
aaagacctgagaatcaaaacgtcggatgtgacgtcaacaaaaggaaatgagtttgaagat
tattgtctgaagcgagagttgctgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcctattgctttgtctggaagggacatcttagccagagct
aagaacggaaccggcaagagcggtgcctacctcattccattacttgaaaggcttgactta
aagaaggacaacatacaagcaatggtgattgttcccacaagagaacttgccctgcaagtc
agtcagatctgcatccaggtcagcaaacacatgggaggggcaaaagtgatggcaaccaca
ggaggaaccaatctgcgggatgatataatgaggcttgatgatacagtgcatgtagtgata
gcaaccccaggaaggattctggatctcatcaaaaagggggtagcaaaggtcgaccatatc
cagatgattgtcctagacgaggcagacaagttactgtctcaagacttcgtgcaaataatg
gaggacattatactcactctaccgaaaaacaggcagattttgttgtactctgcaactttc
cctctaagtgtgcagaagtttatgaattcccacctgcagaaaccctacgagattaacttg
atggaggagctgactctgaagggggtgacccagtactacgcttatgtaacagagcgtcag
aaagtgcattgcctcaacacactcttttccaggctccaaataaaccagtccatcatcttc
tgtaactcctcccaacgggttgaattgttagctaagaaaatctcccagctgggctattcc
tgcttctacattcacgcaaagatgagacaggagcaccgcaatcgagtgttccatgatttc
cggaatggcttatgccgcaaccttgtttgcactgatctctttacccgaggtattgatatc
caagctgtgaatgttgtgatcaattttgattttccaaagctggcagagacatatctccat
cgcattggcagatcaggtcgatttggccatctaggcctagccatcaacttgatcacctat
gacgatcgtttcaacctgaagagtattgaagagcagctggggacagaaattaaacccatc
cctagtaacattgacaagagtctgtatgtggcagaataccacagcgagcctgtagaagat
gataaaccgtaa
DBGET
integrated database retrieval system
