Pantherophis guttatus (corn snake): 117673323
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Entry
117673323 CDS
T07329
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117673323 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgut03041
]
117673323 (SNRNP200)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117673323 (SNRNP200)
Spliceosome [BR:
pgut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117673323 (SNRNP200)
Complex C
U5 SnRNP specific factors
117673323 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
DUF603
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
117673323
NCBI-ProteinID:
XP_060539302
UniProt:
A0ABM3YT51
LinkDB
All DBs
Position
Unknown
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDEDLEGDEAVVRCTL
SANLVASGELMCSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCSLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERCRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGSEEQLVPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDMNLLLCAPTGAGKTNVALMCMLREIGKHINLDGTINIDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVEPTKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQIYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVARLPDM
LNAEIVLGNVQNAKDAVNWLGYTYLYIRMLRSPNLYGISHDDMKGDPLLDQRRLDLVHTA
ALMLDKNNLAKYDKKTGNFQVTELGRIASHYYITNETIQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFEGL
YQDKFPFFNPIQTQVFNTVYNSDENVFVGAPTGSGKTICAEFAILRMLLQNVEGRCVYIT
PMEALAEQIFLDWYEKFQERLLKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIV
FVPSRKQTRLTAIDILTTCASDVQRHRFLHCTEKDVAPYLDKLNDNTLKETVVNGVGYLH
EGLTSMERRVVEQLFSSGAIQVVVASRSLCWGMNLAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKC
ISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSENIRRCTDKGVES
VFDIMEMEDEDRNVLLQLSDAQIADVARFCNRYPNIELSYEVAEKESIHSGGPVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPTTGT
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDTDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccggagcctgcagtacgagtacaaggcgaactctaatcttgtg
cttcaagctgaccggtctctgattgaccggaccagacgcgatgagcctacgggagaggtc
ttatcgttggttgggaagctggaaggcacccgcatgggtgataaggcccaaaggaccaag
ccccagatgcaggaagaaagaagagcaaagaggcgcaaacgtgacgaagacaggcatgac
ataaacaagatgaaaggctacacactgctttccgagggtattgatgagatggtaggaatt
atctataaacccaaaacgaaggagactcgggaaacctatgaagttttactgagcttcatt
caggcagctctgggggatcagcctcgagacattctctgcggagctgccgatgaagtgctg
gctgtcttgaaaaatgagaagctacgagacaaggaacggcgaaaagaaatcgacctcttg
ctggggcaaacagacgacacccgttaccacgtactggttaatctgggcaagaagatcaca
gattatgggggagacaaggagatccagaatatggatgacaacatcgatgagacttacgga
gtgaatgtacagtttgagtccgacgaagaggaaggcgatgaagatgtctatggtgaagtt
cgggatgaagcatctgacgaagatctggaaggcgatgaagccgtcgtacgctgcaccctc
tcagcgaacctggtggcttccggtgagctgatgtgctccaagaagaaagatctgcacccc
agagacatcgacgccttttggcttcaacgccagctgagccgtttctatgacgacgccatc
gtgtcccaaaaaaaggcagacgaagtgctggaaatcttgaagacggccagcgacgaccga
gagtgcgagaaccaactggtcctgctcctgggatttaacacctttgacttcattaaagtc
ctgagacagcacagaatgatgatcctctactgcagtctcctggcaagtgctcagagcgaa
gccgaaaaggaaaggattatgggaaagatggaatcggaccccgagttgtcaaagttcctg
tatcagctgcatgaaactgagaaggaagatctgatccgggaagaacgctgtcgcagggag
cgtgtccgtcaatcccgcatggacaccgacctagaaaccatggatctggaccaaggagga
gaggccctggcccctcgtcaagtgttggacctggaagacctggtgtttgcccaaggaagc
cacttcatggccaacaagcgatgccaactgcccgacggttcgttccgcaaacagcgcaaa
ggctacgaggaagtgcacgtccctgcccttaagcccaagcccttcggatcagaagagcaa
ctcgttcctgtggagaagctccccaaatacgcccaggctggatttgaagggttcaaaacc
ctgaacagaattcagagcaaactttaccgtgctgcactcgaaacggacatgaatctgcta
ctgtgtgcccccacgggtgccgggaagactaacgtggctttgatgtgcatgttgcgcgag
atcggaaagcacatcaatcttgatgggacaatcaacatcgatgacttcaaaattatctac
atcgcacccatgaggtccctggtgcaggagatggtgggcagctttggaaagcgcttggcc
acttacggcatcactgtggccgagctgaccggtgaccaccagttgtgcaaagaagaaatc
aacgccactcaaatcatcgtctgcaccccagagaaatgggacatcattactcgcaaagga
ggggagcgcacctacacccagctggtgcgcctcattatcttggatgagattcaccttctc
cacgacgaccgggggccggttctggaagccttggtggcccgaaccatccgcaacatcgag
atgacccaggaggacgtacggctggtcgggctcagcgccacccttccgaactacgaggac
gtggctaccttcctgagggtggaacccaccaaaggactgttctactttgacaacagtttt
cgccctgttcctctggagcagacctatgtgggaattacagagaaaaaagccatcaagcgc
tttcagattatgaatgaaatcgtgtatgagaagatcatggagcatgccggaaaaaaccag
gtgcttgtgttcgtccactcccgaaaggagacggggaagacggcgcgagccatccgagat
atgtgcctggagaaagacacgctgggcctcttcctgcgagagggctcggcttccacggag
gtcctgaggaccgaggccgagcagtgcaagaatttggagcttaaagacttgttgccctat
ggatttgccattcaccacgccggcatgaccagagtggatcgaacgttggtggaagatttg
tttgcagataaacatattcaggttctggtctccactgcaaccttggcttggggtgttaac
ctccccgctcacacggtcatcatcaaagggacacagatttacagtcctgagaaaggacgc
tggactgagctgggtgccctggacatcttgcagatgttgggtcgtgctggaagacctcag
tatgatacgaagggcgagggcatcctgatcacgtcccacggcgagctgcagtactacctc
tctctcctcaaccagcagcttcccatcgagagccagatggtggccaggctccccgatatg
ctaaacgcagagattgtgctggggaacgtccagaatgccaaggatgcagtgaactggctt
ggctacacttacctctacatacggatgctgagatctcccaatctctacggcatctcccat
gacgacatgaaaggagacccattgctggaccagcgccgactggacctggtgcacacagca
gctctgatgctggacaaaaacaatttagccaaatatgataagaagacggggaatttccag
gtgactgagctgggccgcattgccagccactattacatcaccaacgagaccatccagacc
tacaatcagctgctcaagcccaccttgagtgagatcgaactcttccgcgtcttctctctg
tcctccgagttcaagaacatcaccgtgagagaggaagagaaactggaacttcagaagctg
cttgagagggtcccgattccagtgaaagagagcattgaggagccaagcgctaagatcaat
gtcctcctccaagcttttatctctcaactgaagctagaaggctttgccctcatggcggac
atggtctacgtcactcagtctgctggacggctcatgcgtgccatctttgagattgtcctt
aaccgtggttgggcacagctcaccgacaagaccctcaacctttgtaagatgattgacaag
agaatgtggcagtccatgtgccccctccgacagttcaggaaactgcccgaagaggtggtg
aagaaaattgagaagaaaaacttcccgtttgagcggctctatgacctgaatcacaacgaa
ataggagagctcattcggatgcccaagatgggaaagacaatccacaagtacgtccacctg
ttccccaaactggagctgtctgtccacttgcagcccatcaccaggtctactctgaaagtg
gagctaacgattactcctgatttccagtgggatgaaaaggtccatggttcctctgaagcc
ttctggattttggtggaagacgtggacagcgaggtgatcctccatcacgagtatttcctt
ctgaaggccaagtacgctcaagatgagcacctcatcaccttcttcgtgccggtttttgag
cctcttcctcctcagtacttcatccgggtggtctccgatcgctggctttcctgcgagacg
caactaccggtgtccttccgacacttaatcctaccagagaagtaccctcctcccaccgaa
ctgctggacttgcagcccctgccagtctctgcgttgaggaacagcgcctttgagggcctc
taccaagacaagttccccttcttcaatccaatccagacccaagtgttcaacacggtctac
aacagcgatgaaaatgtctttgtgggtgcgccgacgggcagcgggaagaccatctgcgcc
gagtttgccatcctgaggatgctgctgcagaatgtggaaggccgctgcgtctacatcaca
cccatggaggctctcgccgagcagatcttcctggactggtacgagaaattccaagagcga
cttctcaaagtcgtcttgctgacgggggagaccagcacggatctgaagttgctgggtaag
ggcaacatcatcatcagcaccccggaaaagtgggacatcctgtcccggcgatggaagcag
cgtaaaaacgtgcagaacgtcaatcttttcattgtggatgaagtccacctcattggcggc
gagaacgggccagtcctggaggtgatctgttcccgaatgcgctacatctcctcgcagatt
gagcggcccatccgcattgtggccctcagctcgtccttgtccaacgccaaggatgtggcc
cattggcttggttgcagtgctacggccaccttcaatttccaccccaatgtgcgccctgta
cctctggagctccacatccagggcttcaacatcagccacacccagacccgcctgctctcc
atggctaagccagtctaccacgccatcatgaaacattctcccaagaaaccagtcatcgtg
ttcgttccctctcgcaagcagacccggctcacggccatcgacattctcaccacctgcgct
tcagatgtccagagacacaggtttctgcactgcactgagaaggatgtggctccctacctg
gacaaactgaatgacaacaccttgaaagagactgtggtgaacggggtgggctacctccac
gaggggctgacctcaatggaacgaagagtcgtggagcagctgtttagctcaggggccatc
caggtggtagtggcttcgcgaagcctctgttggggaatgaacttagctgcccacttggtg
atcatcatggacacgcaatactacaacgggaagatccacgcgtatgtggactaccctatc
tacgatgtcctacagatggtgggccgtgctaaccgcccgttgcaggatgacgaaggacgc
tgtgttattatgtgccaggggtccaagaaggatttcttcaagaagttcctctacgagccc
cttccggtggagtctcaccttgaccactgcatgcacgatcacttcaatgccgagattgtc
accaagacaattgagaacaaacaagacgcggtggactacctcacctggaccttcctgtac
cgcaggatgacacagaaccccaactattacaacctgcaaggtgtgtcccaccgacatctc
tccgatcacctttctgagttagtggagcaaaccctgagtgacctggagcagtccaagtgc
atcagtgtggaagatgagatggacgtggcgcctctgaatctgggcatgatcgcagcttat
tattacatcaactacaccaccatcgaactcttcagcatgtccctgaacgccaagacgaaa
gtgagaggtctgattgaaattatctccaatgctgcagaatatgagaatattcctattagg
caccacgaggacaatctcttgcggcagctggcccagaaagtgccccacaagctgaacaac
cctaagttcaacgacccccacatcaaaaccaacctccttttgcaagcgcatctgtcgcgg
atgcagttaagcgcagagctccagtcagacaccgaggagatcctgagcaaggccatccgt
ctgatccaagcctgcgtcgacgtcctctccagcaacggctggctgagccccgccctggca
gccatggagctggcccagatggtcacgcaggccatgtggtcgaaggactcctacctgaag
cagctgccgcacttcacctccgaaaacatcaggcgttgcaccgacaagggagtggagagc
gtgttcgacatcatggagatggaagacgaggaccgcaacgtcctgcttcagctctccgac
gcccagattgcagatgtggctcgcttctgcaaccgataccccaacattgagctctcctac
gaggtggcggaaaaggagagcatccacagtggaggacctgtggttgtgctggtgcagctg
gagcgagaggaggaggtaaccggacccgtgattgccccgctgttcccacagaaacgcgag
gaaggctggtgggtggtgatcggcgactccaaatccaacagcctcatttccatcaagcga
ctgacgctgcagcagaaggccaaggtcaagctggattttgtggctccaaccaccgggacg
cacaactacacgctctacttcatgagcgatgcctacatgggctgcgaccaagaatataag
ttcagcgtggacgtaaaagaggcagagagtgacaccgactccgactga
DBGET
integrated database retrieval system
