Pantherophis guttatus (corn snake): 117674647
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Entry
117674647 CDS
T07329
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pgut
Pantherophis guttatus (corn snake)
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgut03041
]
117674647 (YTHDC2)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117674647 (YTHDC2)
Spliceosome [BR:
pgut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117674647 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_22
AAA_19
nSTAND3
Ank
ATPase
Ank_4
PhoH
AAA_7
T2SSE
SRP54
AAA_16
AAA_29
TrwB_AAD_bind
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
117674647
NCBI-ProteinID:
XP_034288665
UniProt:
A0A6P9DAZ6
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MSRPNSVSPRPSGTGPRPSGSGSTSGGPSTASTASSSSSCSGGGRTKGLKDIRIDEEVKI
AVNISLERFRYGDQREMDFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVKKKDG
SELAHTVMTCNLIPNTKHAIRSLVQRFPVTNKERTELQPKTERGNVFAVEAENREMSKTS
GRLNSGIPQIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVILIVGETGSGKTTQIP
QFLLDDCYKNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTL
LTFCTNGVLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDMLQKHSTLKLILS
SAALDVNLFLRYFGGCPVIYIPGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEQQREEKQ
QTTLTEWYSAQDNSKPELQRQRAVPNVAEEYELLDDGGDTVFSQLAEKDVNCLEPWLIKE
MDACLSDIWLHKDIDAFAQVFHLILTENVSVDYRHSETSATTLMVASGRGFLNQVEQLIG
MGANVHIKSSNGWTALDWAKHFGQTEVIDLLESYCASLESGNLDESSLVHANAGELNIED
RELLKAYHYSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKR
FADNAHRFQVFMLHSNMQTSDQKKVLKTSPLGIRKIILSTNIAETSITVNDVVFVIDSGK
MKEKSFDALNCVTMLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPEL
LRMPLQELCLHTKLLAPINCPIADFLMKAPEPPPALIVRNAVQILKTIDAMDTWEDLTEL
GYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKR
FTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASG
FVRARGGGDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENVVLTGPKEKKVRFHPASV
LSQPQYKKIPPANGQVAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGSAR
LPSNALQEPSSFRVDGVPNDSSDSEMEDRTTANLAALKLDEWLNFKLDPEAATLLLQLRQ
KWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELP
LASSWRSNTSRKSSGESEFADDAFNTERNTPKATLSYDINKEQNNTILRVLMKSTSPAFH
QPLKYKERGVVHSKRSTDDRADQTSVKSTDSISYPSPCASPSPPSSGKGSKSPSPRPNMP
VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVYLVFSVQGSGHFQGFAR
MSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELE
PQVGEQLLQLWDRVPLGERNTAD
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggccaaatagcgtctcgcctcggccctcggggaccggccctcggccctcgggg
agcgggtccacaagcggaggcccctccaccgcctccaccgcctcctcttcgtcgtcctgc
tccggcggtggtcgcactaagggactgaaggacattcgtattgacgaagaagtgaaaatc
gctgtgaatatctctctggaacggtttcgctatggggaccaacgagaaatggattttcct
tcatcattgaccagcactgagagagcttttattcatcggctaagtcagtctcttggtttg
atttctaaaagcaaagggaaaggagcgaacagatatctaactgtgaagaaaaaagatgga
tccgaattagcacatacagtgatgacttgtaatttgattccaaacacaaagcatgctatt
agaagtttagttcagagatttcctgttaccaataaagaacgtacagaacttcaaccaaaa
acagagaggggaaatgtatttgctgttgaagctgagaatagagaaatgagcaaaacaagt
gggcgtcttaacagtggcatccctcagatcccagtgaaacggggagaatcagaatttgat
tcgtttcggcagtctctaccagtttatgaaaagcaagatgaaattgttagaattattaaa
gaaaataaagtaattttgattgtgggggaaactggatctgggaaaactactcagatacct
caatttctacttgatgactgttataaaaatggcataccgtgtcgcatattttgcactcaa
ccaagacggttagcggcgattgctgtggctgaaagagttgctgctgaaagaagagagaag
attggtcagactattggttatcagatccgattagaaagcagggtttctccaaaaacgctc
ttaacattttgcacgaatggtgtattacttcgtacactaatggcgggggatagcgcattg
tctactgtaactcatgttattgtggatgaagtccatgaaagagatcgattcagtgatttt
ttgttaacaaaattaagagatatgttacaaaaacattcgacattgaaactcatactttct
agtgctgctcttgatgtgaatctcttcctcagatattttggaggctgtccagtgatatat
attccaggaagaccctttgaagtaaaagaaatgtttttagaagacatattaagaagtaca
ggctatacaaataaagagatgatcaaatataaaaaagaacaacagcgtgaagaaaaacag
cagacaactttgactgaatggtattctgcgcaagataatagcaagcctgaattgcaacga
cagagggcagtcccaaatgtagctgaagaatatgaactgctagatgatgggggtgacact
gtcttcagtcaattggctgaaaaagatgttaattgtcttgaaccttggttaattaaagaa
atggatgcttgtctttctgatatttggctacataaggacattgatgcttttgcacaagta
ttccatcttattttaactgaaaatgtcagtgttgattacaggcatagtgaaacaagtgca
acaacattaatggtagcttctggaagaggttttttgaatcaagtagaacagctgattggt
atgggagcaaatgtccatatcaaatcatccaatggctggacagctttggattgggctaaa
cactttgggcagacagaagtaattgacctgctggaatcttattgtgcctcattagagtct
ggtaatttagatgaaagttctttggtccacgctaatgctggtgaactgaatatagaagat
cgagagctcctgaaagcttatcactacagttttgatgatgaaaaggtagatcttgacctg
ataatgcacctattgtacaacatctgccatagctgtgatgcaggtgcagttttaattttt
cttcctggatatgatgagatagttggattgagagatcgcatactctttgatgacaaaaga
tttgcggataatgctcacagattccaggtgtttatgctgcactcaaatatgcagacatct
gaccaaaaaaaggttcttaagacttctcctctaggcatccgcaaaataatactttctaca
aatattgcagaaaccagtatcacagtaaatgatgttgtttttgtgattgactcaggaaaa
atgaaagagaagtcttttgatgcactgaattgtgtaactatgcttaagatggtatggatt
tctaaagcaagtgctgttcagaggaagggcagggcaggacgttgtcgacctggaatttgt
tttagacttttcagtaggttaagatttcaaaatatgttggaatttcagacacctgaactt
ctaagaatgcctctacaagagctttgtttacatacaaaattgctagctcccatcaattgt
ccaattgctgacttcttaatgaaagctccagagccacctcctgctttaattgtgagaaat
gctgtgcagatactaaagaccatagatgctatggacacctgggaagatttaacagaactt
ggctatcatcttgctgacttacctgtagaaccccatcttgggaaaatggtgctgtgcgct
gtggttctgaagtgcctggatcctattctgacaattgcttgtacacttgcgtatcgggat
ccttttgtgctacccacacaggcttctcaaaaacgtgcagccatgctgtgtagaaaacga
tttactgcaggaacatttagtgaccatatggctcttcttcgggctttccaggcatggcag
aaagcacgaagtgatggctgggaaagagctttttgtgagaagaacttcctttctcaggca
accatggaaattatcataggaatgagaacacagttgcttgggcagctgagagcatcaggt
tttgttagagccagaggtggtggtgatataagagatgtgaacacaaactcagaaaattgg
gctgtagttaaaggagccttagtagctggaatgtatccaaatatcgttcatgttgacaga
gagaatgtagttttgactggaccgaaggagaaaaaagtccgttttcatcctgcatctgtt
cttagccagccccagtataaaaagatacctcctgcaaatggccaagtagctgctattcag
gcacttcccactgactggcttatatatgatgaaatgacaagagcccaccgaatagctaat
atcaggtgctgctcagttgtgactccagtcacagtggccctcttctgtggatcagctagg
ttgccaagtaatgctttacaggagccttcttccttccgagttgatggtgtccctaacgat
agcagtgatagtgaaatggaggatcgaacaactgcaaacttggctgctttaaaattagat
gagtggctcaatttcaaattagatccagaggctgctaccctcctcttgcagttaagacaa
aaatggcatagtttatttctgcgacgtatgagagctccttcaaagccatggtctcaagtt
gatgaagcaacaatacgagcaatcattgcggttttgagcactgaagaacaatctgcaggt
ctgcagcagccttcaggaattggacaaagaccaagacctatgtcatctgaagaacttccc
ttagcatcttcttggagatcaaacaccagtcgaaaaagctcaggagaatcagaatttgca
gatgatgcttttaatacagaaagaaatactcccaaagcaactttaagctatgatataaac
aaagagcaaaacaatacaatattaagagtcttaatgaaatctacatctccagcatttcac
caaccattgaaatacaaagaaaggggtgttgtgcattccaaacgaagcacagatgacagg
gcagaccaaacatctgtgaaatccacagatagtatcagttatcccagtccctgtgccagt
ccttctcctccatcatctgggaagggttccaaatctccttctccaaggccaaatatgcca
gttcggtactttattatgaaaagcagcaatttaaggaatcttgaaatttcacaacagaag
ggaatttggtctacaactccaagtaatgagaggaaactgaatcgtgctttttgggaaagt
agtgttgtttacttagtattttctgttcagggatcaggacattttcagggttttgctcga
atgtcttctgagataggccgtgagaaaagtcaggactggggttctactggtttaggggga
gtgttcaaggtggaatggatccggaaggaaagtcttccttttcaatttgctcatcatctg
cttaatccttggaacgacaataagaaagtacagataagccgagatggccaggaactggaa
cctcaggttggtgaacagttactacaactatgggaccgtgttcctctaggggagagaaat
acagcagactga
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integrated database retrieval system
