Pantherophis guttatus (corn snake): 117678360
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Entry
117678360 CDS
T07329
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut04382
Cornified envelope formation
pgut04510
Focal adhesion
pgut04512
ECM-receptor interaction
pgut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117678360 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117678360 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117678360 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117678360 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgut04147
]
117678360 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pgut00536
]
117678360 (COL4A4)
Exosome [BR:
pgut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117678360 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pgut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117678360 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117678360
NCBI-ProteinID:
XP_060538886
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
MNCLYRSKFVMCVWWLIIVASVQTSYGGSYIGHCGGEDCSICRCFPEKGSRGQPGQPGVQ
GPIGGLGSIGPIGLPGEKGQRGDPGLPGPLGERGNMGPTGVPGFSGLDGMPGLPGIEGPR
GKPGADGCNGSRGDPGLPGEVGCIGPKGSLGIPGQKGEKGNSVYISEFIQGTTGERGDPG
PQGMPGPRGEKGPRGPSGFPGQPGEQGFQGQPGLPGDQGYPGIGVEGQKGEPGDVGPPGS
PGQPLLVGPPSSRLLKGEKGIKGMPGSTGSKGLRGQKGEFVFGDKGDKGIPGFPGKQGIP
GSYGSLGFPGNKGKTGAHGIPGQDGLIGIKGDPGDNGQPGPPGPRGTALTGPKGIQGDKG
DPGIPGERGTDGMPGSAGGKGRQGEDGLSFPGPKGALGVEGPQGFHGDPGLSAQSNTALG
RPGSPGLPGFPGVPGRRGLPGPPGVACKGRGSPGEPGAKGEIGSPGERGGKGVKGNPGNC
SCGLGPCGPPGQRGLPGIPGRKGEVGTPGKYGRKGDPGSPGRRGEPGSLGLPGPFGLTGE
KGDKGDPAEVRIKGVKGQRGVPGIYGFPGINGTSGKTGEGGLAGDKGIQGEDGRAIQGDK
GFPGDPGIPGSRGQMGAPGFGIQGPQGVQGLPGDPGDPGMKGTSGAKGQKGITLPSGRTY
PGNSGIPGFKGIPGPKGLRGSPGPPGPNGFDGFKGQKGRLGTSGNPGPEGLRGEIGDPGD
PGEQGSSQDGPPGLPGLPGLQSPKGVPGDITYSPPGTPGKRGLPGLPGLPGLRGDPGFPG
LQGQPGTPGLPGAKGPRGPKGDTGVMGYPGSPGLICEKMLEGLPGPPGSFGTQGPKGLKG
IKGPQGDMGASGPAGMKGLPGAPGTHGPPGFPGLRGDPGFSGENGLPGLPGTKGDKGFEG
MQGFPGLPGNAGEMGASGVKGEEGQIGLSGPPGEFGRKGSNGEPGLPGDKGRINVLQVKG
QHGELGLLGDKGLPGVQGDKGNTGFRGIPGPPGKQAAPGTQKGQPGDAGHSGSQGPLGPP
GPPGVTGIIGFQGQKGNQGAQGPSGLPGPPGLDGQKGSKGSRGDPATHYGEPGKKGPIGV
QGLPGLPGLPGDQGILGVQGEPGKQGSKGLPGNSGIPGFPGVQGAAGFPGLPGEQGKPGF
LGTPGFPGSPGNPGRKGLSGSPGVNGVNGEKGQKGLPGPPGLSEMGPPGCIGEQGPKGNR
GEPGLPGRTQLGPQGEKGLRGPPGKPGVSGSAGLMGQPSENRTCGFPGDQGPAGSDGIRG
PPGKPGSPGKTILIKGDPGDSGTLGPPGVPGPCGNQGTKGIPGNQGRKGSKGLTGKPGLQ
GPSGVPGDPGTQGFQGPIGPVGHKGDPGEPGSVDYSSCPKIPGPPGVLGPRGPPGFVGLR
GPIGFPGPPGNKGEEGSLGEQGLEGSLGPPGPHGDQGDMGEEGNPGPQGLPGQTGIPGPP
GSASKWSSGFLLVLHSQSETEPFCPEGMTRLWTGYSLLYFEGQEKAHNQDLGLAGSCLPV
FSTMPFTYCNVNQVCYYASRNDKSYWLSSAAPLPMMPLSDEEIEHYISRCVVCEAPAQAV
AVHSQDQSIPSCPPNWRSLWIGYSFLMHTGSGDQGGGQSLTSPGSCLEDFRSAPFIECQG
QQGTCHFFINEYSFWLATVNNETQFVSSPVSGTIKDQQEQRQNIGRCQVCMKYA
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcttatatcggagtaaatttgttatgtgtgtatggtggctaataattgttgct
tcagtccagacatcttatgggggctcatatattggacattgtggtggagaagattgttcc
atttgccggtgctttcctgaaaaaggctcaagggggcaacctggtcagccaggagtccag
ggtccaattggtggtctgggttccattggacctattggtttgccgggagaaaaaggccag
agaggtgatcctggtctacctgggccacttggtgaaagaggaaatatgggtccaactgga
gttccaggattttcaggtctagatggaatgcctgggctaccaggaattgaaggacccaga
gggaagcctggggcagatggatgtaatggttcaagaggtgatccaggacttccaggagaa
gttggatgcattggaccaaaagggtcacttggtatccctggccaaaaaggagaaaaagga
aattccgtatatatttctgaattcatacaagggacaactggagaaagaggggaccctgga
cctcaaggcatgcctggtcctagaggagaaaagggacccagaggtccatctggatttcca
ggccaacccggtgaacagggttttcaaggtcaacctggtttaccaggtgatcaggggtat
ccaggaattggagtggaaggacaaaagggagagccgggtgatgtaggacctcctggatct
ccaggacagccattactggttggaccgcctagttctagactgttaaagggagaaaaggga
ataaagggaatgcctggatctactggctcaaaaggattgcgtggccagaaaggtgaattt
gtatttggagacaagggtgataaggggattcctggttttcctggaaagcagggaattcct
ggctcatatggttctctgggtttcccaggaaacaagggtaaaactggagcacatggaatt
cctggtcaagatggcttgataggcattaagggggatcccggagataatgggcagcctggg
ccaccaggacctcgaggaactgcactcactggaccaaagggtattcaaggagacaaagga
gatcctggaattcctggagagagaggaacagatggaatgcctggttctgctggtggcaaa
ggaaggcaaggggaagacggactcagctttcctggtcctaaaggtgcattgggtgtagag
ggtcctcaaggcttccatggtgaccctggtctctcagctcaatctaatacagctctggga
aggccaggatctccagggttacctggttttccaggagtaccaggaagacggggcttgcct
ggaccacccggtgttgcctgtaaggggagagggtcccctggagaaccaggagctaaaggt
gaaataggatcgcctggagaaagaggtggaaaaggagtgaaaggaaatccagggaactgc
tcatgtgggcttggcccttgtggtccacctggccaacgaggtctaccagggatacctggg
agaaaaggagaagtgggaacacctggaaaatatggaagaaaaggtgatcccggttctcct
ggtagaagaggagagccaggatccttaggattgccaggtccatttggactgacaggtgaa
aaaggagataaaggtgacccagctgaagtaaggatcaaaggggtaaaaggacaaagaggt
gttccagggatatatggatttccaggaataaatggcacttctggcaagacgggagaagga
ggattggcgggtgataaagggattcaaggagaagacggaagagctatacaaggtgataaa
ggatttcctggagaccctggaattcctggctcaagaggtcaaatgggggcacccggtttt
gggattcagggcccacaaggtgtccaaggcctacctggagatccaggagaccctggtatg
aaaggaacatctggggcaaagggtcaaaaaggtattactcttccaagtggaagaacatat
cctgggaattcaggtataccaggatttaaaggtataccaggtccaaaagggttaagaggc
tcacctggcccacctggacccaatggttttgatggtttcaaaggccaaaagggtagacta
ggaacatcaggcaatcctggtccagaaggtttaaggggtgagattggtgatccaggtgat
ccaggtgaacaaggttcaagtcaggatggccctcctggattgccaggccttcctgggctt
caaagtccaaaaggtgttccaggtgacattacctacagtcctccaggtaccccgggcaaa
agaggtcttccagggctaccaggtttgccaggcctaagaggtgaccctggttttcctgga
cttcaagggcaacctggcaccccagggcttccaggagctaaaggtccccgaggcccaaaa
ggtgacacaggagtgatgggttatcctggatcacctggactgatttgtgagaaaatgttg
gaggggctaccaggaccaccaggctcttttggaacacaaggacctaaaggattgaagggt
attaaaggtcctcaaggagatatgggagcatcaggcccagctggaatgaaaggattgcca
ggagcccctggaacccacgggccacccggctttccaggcttacgaggagatccaggattt
tcaggggaaaacggactgccaggtcttccagggacaaaaggagacaaaggatttgaaggc
atgcaaggtttcccaggccttccaggaaatgcaggagaaatgggagcatcaggtgtaaaa
ggagaagaaggacaaattggtctatctggtcctcctggagaatttgggagaaagggttcc
aacggtgaaccaggattaccaggggacaagggcagaatcaatgtcctgcaagtaaaagga
caacatggagaactaggccttcttggtgataaggggttaccaggggtccaaggtgataaa
ggcaatactggattcagaggaattccgggaccaccaggcaaacaagcagctccaggcact
caaaagggtcagcccggcgatgctggacactctggttcccagggcccactaggtccccca
gggcctccaggtgtgacagggataattggttttcaaggacaaaaaggcaatcagggtgca
cagggaccatcaggtcttcctggacctccaggacttgatggccaaaaaggatcaaaaggt
agcagaggtgacccagctactcattatggtgaacctggcaagaaaggccctataggagtc
caaggattaccaggacttcctggattacctggagaccagggtatattaggtgttcaagga
gaaccaggaaaacagggttccaaaggactgcctggaaactcaggaatacctggattccca
ggtgtgcagggagctgcaggatttccaggacttccaggtgaacaaggtaaacctggtttt
ttgggaactccaggtttcccaggatcacctggtaacccaggtagaaaaggcttatcggga
tcacctggagtaaatggtgtaaatggagaaaaaggtcaaaagggtttgccaggacctcca
ggtttaagtgaaatgggacctccagggtgcataggagaacaaggaccaaaaggtaacaga
ggagaacctgggcttccaggaagaactcaactaggtcctcaaggagagaaaggtctaaga
ggtcctcctggtaagccaggtgtttctggttctgctggccttatgggtcagccttctgaa
aataggacttgtggctttccaggagaccaaggtccagctggctcagatggcattagaggc
cctccaggaaaacctgggtctccaggaaaaactatacttattaaaggagatccaggggac
tctggtactttgggcccacctggtgttcctggtccatgtggtaaccagggaactaagggt
attccaggaaaccaaggaagaaaaggctcaaaaggtctaacagggaagcctggtctgcaa
ggaccatctggtgttcctggggaccctggaactcaaggttttcaggggccaattggtcct
gtgggccacaagggtgatccaggagagcctggaagtgttgattactcatcatgtcctaag
attccagggcctcctggagtattaggcccacgaggaccaccaggctttgtaggattaaga
gggccaattggctttcctggacctccaggaaataaaggagaagaaggttcattaggtgag
caagggctagaaggctcgctaggaccaccaggacctcatggtgatcaaggtgacatggga
gaagaaggaaacccaggaccacaaggtcttccaggccaaactgggattccagggccacca
ggatcagcatccaaatggagtagtgggttcctgcttgttttgcatagtcagtcagaaaca
gaaccattttgcccagagggaatgacaagattgtggactggatacagcctgctgtatttt
gaagggcaggagaaagcccataatcaagatcttggtctggctggatcctgtcttccggtg
tttagcacgatgccttttacctactgcaatgtcaatcaagtctgctactatgcaagtcga
aatgataaatcttactggctttcaagtgcagctccgttgcccatgatgcccctctcagat
gaagaaatagagcactatattagtagatgtgtagtatgtgaagctcctgcccaagctgtt
gcagttcatagtcaagatcaatccattccttcttgtccaccaaactggagaagtctttgg
ataggttactcattcttaatgcatacaggatctggtgaccaaggaggcgggcaatctctc
acatcacctggaagctgcctggaggacttccgatcagcaccctttattgaatgtcagggt
caacaaggaacatgtcacttttttattaatgaatacagtttctggctggctacagtgaac
aatgagacacagtttgtatcatcccctgtctcagggactatcaaagatcaacaagaacaa
cgccaaaatattggcaggtgtcaggtttgcatgaaatatgcctag
DBGET
integrated database retrieval system
