Pantherophis guttatus (corn snake): 117679193
Help
Entry
117679193 CDS
T07329
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117679193 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117679193 (MTREX)
03041 Spliceosome [BR:
pgut03041
]
117679193 (MTREX)
03009 Ribosome biogenesis [BR:
pgut03009
]
117679193 (MTREX)
03016 Transfer RNA biogenesis [BR:
pgut03016
]
117679193 (MTREX)
Enzymes [BR:
pgut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117679193 (MTREX)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117679193 (MTREX)
Spliceosome [BR:
pgut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117679193 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
117679193 (MTREX)
Ribosome biogenesis [BR:
pgut03009
]
Eukaryotic type
Pre-60S particles
Helicases
117679193 (MTREX)
Transfer RNA biogenesis [BR:
pgut03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117679193 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117679193
NCBI-ProteinID:
XP_034296769
UniProt:
A0A6P9DLS2
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADAFGDELFSVFEDDSASGSGLKETKGTSEAATSNKPGKQRDGKSGAPAKIQAKKKRDA
EFTSADITALGKRPKLDDISTDDLNLADVMPKVKVQAVETIECCTHEVALPADMDFVALK
ARTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRNSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVN
TLEQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNED
DDFGWGVVVNFSKKSNVKLNSGELDPLYIAEVLLHCSKDSLKNSATEAAKPAKPDEKGEM
QVVPVLVHLLSSISSVRLYIPKDLRPLDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIK
EPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKTQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQAT
ALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLSLFRPNL
MDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgaactgttcagcgtgttcgaagacgattccgcctccggc
tctggcttgaaggaaacgaagggaacatccgaggcggccacttcaaacaagccaggaaaa
caacgagatggcaaatctggggcgcctgcaaaaatccaagccaaaaaaaagcgtgatgca
gaatttactagtgcagatattacagctttgggaaagagaccaaagttggacgacatctct
acggatgatcttaatttggcagatgtgatgccaaaagtaaaggtacaagctgttgaaact
attgaatgctgtacacatgaggttgctcttcctgcagatatggacttcgtagccctgaag
gcaagaactggaaaagctgcaaaggaatatccattcattcttgatgcttttcaaagagaa
gctattttgtgtgtggataataatcagtctgttttagtatctgctcatacctcagcagga
aaaactgtttgtgcagagtatgccattgctttggctttaagagaaaaacagcgtgtgata
tttaccagtcctattaaagctcttagtaaccaaaaatatcgtgagatgtatgaagaattt
caagatgttggcttgatgacgggggatgtcaccatcaatcctacggcgtcttgccttgta
atgactacagagattttgagaagtatgctttacagaggttctgaggttatgcgtgaagtt
gcttgggttatatttgatgagattcattacatgagaaattcagaacgtggtgtggtatgg
gaagaaaccattattttgctccctgataatgttcattatgtgtttctttctgccactatt
ccaaatgcgcgccagtttgctgaatggatatgtcatcttcacaaacagccttgccatgtg
atctacactgattacagaccgactcctttgcaacattatatttttccagcagggggagat
ggacttcaccttgtagttgatgaaaatggtgattttagagaagataattttaatacggcc
atgcaggtacttcgtgatgcaggtgatttagccaaaggagaccagaaaggcaggaaagga
ggaaccaaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttc
caaccagtaattatattcagtttcagtaagaaagattgtgaagcctatgcacttcagatg
acaaaactggatttcaacacagatgaagaaaaaaggatggttgaggaagtgtttaacaat
gcaattgattgtttgtctgatgaagacaagaagctcccacaagttgaacatgtgcttcca
cttttaaaacgtggtattggaatccatcatgggggcttacttcctattttgaaggaaacc
atcgaaattcttttctctgaagggctgataaaagcattatttgctacagagacttttgct
atgggaataaacatgccagcaaggacagtgctttttacaagtgcccggaagtatgatggg
aaagatttccgatggatttcctcaggtgaatacattcagatgtctggccgtgctgggcgc
cgaggcatggatgatcgaggaatagtcattttaatggttgatgaaaagatgagtccaaca
attggaaaacagcttctaaagggatctgctgaccctttaaacagtgctttccatttgacc
tacaacatggtactaaatttgctgcgcgtagaagaaattaatccagaatacatgttagaa
aaatctttttatcaattccagcattacagagctattccaggagtagttgaaaaagttaat
actttggaacaacagtataatgaaattgaaattccaaatgaagaaaatgtgatcatctat
tataaaattagacagcaacttgctaaactgggtaaagaaatagaggaatatattcataaa
ccaaagtactgcttgccatttttacaacctggaagactggtaaaagtgaaaaatgaagat
gatgactttggatggggagtggtggttaatttttccaagaaatccaatgtgaagcttaat
tctggtgaactggatcccctctatattgctgaagtcctcctacactgtagtaaagatagc
ctgaaaaattctgcaactgaagctgcaaagccggcaaaacctgacgaaaaaggggagatg
caggttgttcctgtcctggtgcaccttctgtcatccatcagcagtgttcgactctatata
cccaaagacctgaggcctcttgataatagacagagtgtattgaaatcaatacaggaagtg
cagaggcggtttcctgatggagttcctttgctggatcctattgatgacatgggcattaaa
gagccaggtctgaaaaaagtaatccaaaaaatagaagcatttgaacataggatgtattct
cacccgcttcacaatgattctaatttggaaactgtatacaaactttgtgaaaggaaaaca
cagattgctgtagacataaaagcagctaaacgggaattgaaaaaagcaaggactgttttg
caaatggatgagctcaaatgtcgtaaacgtgttcttagaagattgggcttcgcaacctct
tcggatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgcagatgagctt
ttgctgacagaaatgatgttcaacgggcttttcaatgatttaactgcagaacaagcgact
gctttattaagctgctttgtatttcaagaaaattctagtgaaatgcccaaactaactgaa
cagttagcaggtcctctccgacaaatgcaggaatgtgcaaaaagaattgccaaagtttca
gcagaagctaaattggaagttgatgaggaaaactatctcagtttgttcagaccaaacctg
atggatgtggtatacacatgggccaatggagctacatttgctcatatctgtaaaatgaca
gatgtctttgaaggtagcataattcgatgtatgagaaggctagaagaattgcttagacag
atgtgccaagcagcaaaggccattggaaatacagaactggaaaacaaatttgcagaagga
attacaaaaatcaagagagacattgtgtttgctgcaagtctttatctataa
DBGET
integrated database retrieval system
