Pantherophis guttatus (corn snake): 117679472
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Entry
117679472 CDS
T07329
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117679472 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgut03019
]
117679472 (PARN)
Enzymes [BR:
pgut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117679472 (PARN)
Messenger RNA biogenesis [BR:
pgut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117679472 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
117679472
NCBI-ProteinID:
XP_034297318
UniProt:
A0A6P9DPC4
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
MEVTRGNFKSALGTVYEAVEDADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLRKH
SMDFLLFQFGLCTFKYDHTESKYIMKSFNFYIFPKPLNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGLGGLAYMSPGAAKPPSAVPEDQKKF
IEKVVERIEDLLQNEGNTTVQLEPCTGFQRKLIYQTLSWKYPKGIHVETVETEKKERYMI
ISKVDEEERKRREQEKQAREQEELKDAVGFSRVIHALANSGKLVVGHNMLLDVMHTIHQF
YCSLPEDFSEFKELATCVFPRLLDTKLMASTQPFKEIIKNTSLAELEKRLKEMPFSPPRV
ESAEGFPSYNTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPANHVSPSSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIHVCWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYIEKKQEERRQAKRKWAEDSWKEMEVKRL
KTQASPFALQSRYYSVCSFSTPSSVGKRSMSPIQEESITDDLEEATVQEVDLATPSPFQE
PAEEEKKQAKKLRKGKREQTLGGGLKVTPTRLFDVPDTW
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacccgcggcaatttcaagagcgcgctgggcaccgtctacgaggccgtggag
gacgccgatttcctggccatcgacggggagttttcaggcatcagcgatgggccgtccgtg
agcgcgctgaccaacggcttcgacacgcccgaggagcgctaccagaagctgcggaagcat
tccatggatttcttgctgttccagtttggcctatgcacttttaagtatgatcacacagaa
tctaagtatattatgaaatcatttaacttctatattttccccaaacctttgaacagaaca
tcaccagatgtcaagtttgtctgtcagagctcaagtatagattttttagcaaaccaggga
tttgattttaataaagtttttcgaaacggtatcccttacttaaatcaagaggaagaaaga
cagttacgggagcaatatgacgagaagcgctctcaagccaatgggcttgggggcttggca
tatatgtcacctggtgctgccaagcctccatcggctgttcctgaggatcagaagaagttc
atcgagaaagttgtagaaaggatagaagatctcctgcaaaatgaaggaaacaccaccgtg
cagctggagccatgcaccggatttcagaggaaactaatctatcagacgctgagctggaag
tatccaaaaggcatccatgttgaaactgtggaaacagaaaagaaggagcgatacatgatc
atcagcaaagtggacgaagaggagcggaagagaagagagcaagagaagcaagcgagagag
caggaggagctgaaggatgcggtggggttttcccgagtcattcacgcccttgcaaattca
ggcaagctcgtggtcggacacaacatgttgctggacgtcatgcacaccatccatcagttc
tactgctccctccccgaggattttagtgagttcaaagaactagcaacatgcgtctttcca
aggctattggacactaaattgatggcaagcactcagccattcaaggaaatcattaagaac
acatccctggcagagttggaaaagcgtttgaaggagatgcccttcagccctccaagagtt
gaaagcgccgagggctttcccagctacaacacggcttcagagcagcttcatgaagctggt
tatgatgcctacatcacgggcctctgcttcatctccatggcaaacttcttaggttcattt
ctcagccctcctgcaaatcatgtttctcccagttcaaagctgatagagccttttttcaac
aaattatttctgatgagggtgatggacattccatatctcaatttggaaggaccagatcta
cagccaaaacgtgatcacgtcctttatgttacctttcccaaagagtggaagacaagtgac
ctttaccagctctttagtgctttcggaaacattcacgtgtgttggattgacgatacatca
gcatttgtatccttgagtcagcctgaacaagttcagattgctgttaataccagcaagtat
gctgaaagttaccggattcagacttatgcagaatatattgaaaagaagcaggaggagagg
aggcaagcgaagaggaaatgggcagaagacagttggaaggagatggaagtgaagcgctta
aagacgcaggccagccccttcgcactccagagccgctactacagtgtttgcagtttttca
acccccagctctgtggggaagagaagcatgagccccatccaagaggagagcatcacagat
gacctggaggaggccacggtgcaagaggtggacctggccactccaagccccttccaggag
cccgctgaagaagagaagaagcaagccaagaagcttaggaaggggaaaagggagcaaaca
ttaggtggggggctcaaggtcactcccaccaggctctttgatgtgccagacacgtggtag
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