KEGG   Polymorphum gilvum: SL003B_0111
Entry
SL003B_0111       CDS       T01458                                 
Name
(GenBank) Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein
  KO
K03185  2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
Organism
pgv  Polymorphum gilvum
Pathway
pgv00130  Ubiquinone and other terpenoid-quinone biosynthesis
pgv01100  Metabolic pathways
pgv01110  Biosynthesis of secondary metabolites
pgv01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    SL003B_0111
SSDB
Motif
Pfam: FAD_binding_3 DAO SE Lycopene_cycl Thi4 Pyr_redox_2 Pyr_redox NAD_binding_8
Other DBs
NCBI-ProteinID: ADZ68549
UniProt: F2IZC7
LinkDB
Position
117517..118755
AA seq 412 aa
MKTKSAAQDMLDVAIAGGGYVGLSLALALKQADPDLKVAVIDPKPGDALAKDPRASAIAA
AACRMLDRLGVWQDIAAEAQPINEMIVTDSRLRDAVRPVFLTFGGDRESGEPFAHMVPNA
RMLPALHEAAAALGTEYLQPDGLHSFQVQPDCVVLHTDRGTERRARLLVAADGVRSRLRD
LAGIRTVHWAYGQSGIVTTVAHERPHNGRAEEHFLPAGPFAILPLKGNRSSLVWTERTAD
AERLVRSDDFTFELELERRFGHHLGKLHLTGPRHAYPLGLTLARDFVRPRFALAGDAAHG
IHPIAGQGLNMGFKDVAALAEVLVEARRLGQDLGAMDVLERYQRWRRFDTFQMGVVTDVL
NRLFSNDVDLVRGVRDFGLGLVDRMPRLKTLFIREASGFAGPAPRLLAGEAI
NT seq 1239 nt   +upstreamnt  +downstreamnt
atgaagacgaaatcggcagcgcaggacatgctcgacgtcgccatcgccggcggcgggtat
gtcgggttgtcgctggcgctggcgctcaagcaggcggatccggatctgaaggtggcggtg
atcgatcccaagccgggcgatgccttggcgaaggatccgcgcgcctcggcgatcgcggcg
gcggcgtgccggatgctcgaccggctcggcgtctggcaggacatcgccgccgaggcccag
ccgatcaacgagatgatcgtcaccgacagccggctgcgcgatgccgtgcggccggtgttc
ctgaccttcggcggcgaccgcgaaagcggcgagcccttcgcccatatggtgccgaacgcc
cgcatgctgccggcgctgcacgaggcggcggcggcgctggggaccgaatacctgcagccc
gacggactgcacagcttccaggtgcagcccgactgcgtggtgctgcacaccgaccggggc
accgagcgtcgggcgcgcctgctggtggcggctgacggcgtccggtcgcggctgcgcgac
ctggcgggcatccgcaccgtgcactgggcctacggccagtcggggatcgttaccaccgtc
gcccacgagcggccgcacaacggccgagccgaggaacattttctgcccgccgggccgttc
gcgatcctgccgctcaagggcaaccgctcgtcgctggtgtggacggagcggacggcggat
gccgagcggcttgtccgcagcgacgacttcaccttcgagctggagctggagcgccgcttc
ggtcatcatctcggcaagctgcatctgaccggtccgcgccacgcctacccgctcggcctg
accttggcgcgcgatttcgttcggccgcgcttcgcgcttgccggcgatgccgcccacggc
atccacccgatcgccggccagggcctgaacatgggtttcaaggacgtggcggcgctggcc
gaggtgctcgtcgaggcgcgccgtcttggccaggatctcggcgcgatggacgtgctcgag
cgctatcagcgctggcgccggttcgataccttccagatgggcgtggtaacggacgtgctg
aaccggctgttttccaacgacgtcgacctggtgcgcggggtgcgcgacttcggtcttggc
ctggtcgaccggatgccgcggctgaagacactgttcatccgcgaggcctccggcttcgcc
gggccggcgccgcgcctgctcgcaggcgaggcgatctga

KEGG   Polymorphum gilvum: SL003B_0554
Entry
SL003B_0554       CDS       T01458                                 
Name
(GenBank) Peptidase U32
  KO
K24845  2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
Organism
pgv  Polymorphum gilvum
Pathway
pgv00130  Ubiquinone and other terpenoid-quinone biosynthesis
pgv01100  Metabolic pathways
pgv01110  Biosynthesis of secondary metabolites
pgv01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    SL003B_0554
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pgv01002]
    SL003B_0554
Enzymes [BR:pgv01000]
 1. Oxidoreductases
  1.97  Other oxidoreductases
   1.97.1  Sole sub-subclass for oxidoreductases that do not belong in the other subclasses
    1.97.1.15  2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate)
     SL003B_0554
Peptidases and inhibitors [BR:pgv01002]
 Peptidases of unknown catalytic type
  Family U32
   SL003B_0554
SSDB
Motif
Pfam: Peptidase_U32
Other DBs
NCBI-ProteinID: ADZ68987
UniProt: F2J405
LinkDB
Position
complement(583296..584192)
AA seq 298 aa
MAAIELALGPCLFNWPADRLADFYARIADEAPVERVYVGEVVCGKRMPFTDPLWPQVIER
LQRAGKTVVLSALALPATVRERKTLKDLAASGLTLELNDFSLLADPLERAFVAGPFLNVY
NEAALGFLAARGASDWCPPVEVPLDSIRKAGAAHPQITVELFAFGRLPLALSSRCYHARA
HGLAKDSCQFVCDRDPDGMAVRTLDNRRFLAVNGIQTLSDACQAVTLDADRLAANGIGRL
RLSLHTVDMVAVARTYRALLDGDMSPADAESALTAMDLPGPVCNAYLAGEAGWRHVTL
NT seq 897 nt   +upstreamnt  +downstreamnt
atggctgccatcgaactggccctcgggccatgcctgttcaactggccggcggatcgtctc
gccgatttctatgcccgcatcgccgacgaggcgccggtcgagcgcgtctatgtcggcgag
gtcgtctgcggcaagcgcatgcccttcaccgacccgctgtggccgcaggtgatcgagcgg
ctgcagcgggccggcaagacggtggtcctgtccgcgctcgcgctgccggcgacggtacgc
gaacgcaagacccttaaggaccttgccgcatccggcctgacgctcgaactcaacgacttc
tccctgctcgccgatccgcttgagcgagcgttcgtcgccggcccgttcctcaatgtctac
aatgaggctgcccttggcttcctcgctgcgcgcggggccagcgactggtgcccgccggtc
gaggtgccgctggactcgatccgcaaagccggcgccgcgcatccgcagatcacggttgaa
ctgttcgccttcgggcgcctgccgctcgccctgtcgagccgctgctatcacgcccgtgct
cacggcctcgccaaggattcctgccagttcgtctgcgaccgcgaccccgacggcatggcg
gtgaggaccctcgacaacaggcgcttcctggcggtcaacggcatccagaccctgtcggat
gcctgccaggcggtcacgctcgacgcggaccggctcgcggccaacggcatcggccgcctg
cgcctgtcgctgcacacggtcgacatggtcgccgttgcccggacctaccgggccttgctc
gacggcgacatgtctccggccgacgcggaatcggcgctcacggcgatggatcttcccgga
ccggtgtgcaacgcctaccttgccggagaagccggatggcgacacgtgaccctgtag

KEGG   Polymorphum gilvum: SL003B_0555
Entry
SL003B_0555       CDS       T01458                                 
Name
(GenBank) Peptidase U32
  KO
K24844  2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
Organism
pgv  Polymorphum gilvum
Pathway
pgv00130  Ubiquinone and other terpenoid-quinone biosynthesis
pgv01100  Metabolic pathways
pgv01110  Biosynthesis of secondary metabolites
pgv01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    SL003B_0555
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pgv01002]
    SL003B_0555
Enzymes [BR:pgv01000]
 1. Oxidoreductases
  1.97  Other oxidoreductases
   1.97.1  Sole sub-subclass for oxidoreductases that do not belong in the other subclasses
    1.97.1.15  2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate)
     SL003B_0555
Peptidases and inhibitors [BR:pgv01002]
 Peptidases of unknown catalytic type
  Family U32
   SL003B_0555
SSDB
Motif
Pfam: Peptidase_U32 Terminase_6C
Other DBs
NCBI-ProteinID: ADZ68988
UniProt: F2J406
LinkDB
Position
complement(584207..585235)
AA seq 342 aa
MNAATRSAPAQRHPLELVCPAGTPAALRAAVDAGAHAIYCGFNDETNARNFPGLNFSGPE
LAAGIDYAHRHGAKVLVAINTFARPGALDIWQKAVDTAAGAGADAVIAADLAVLDHAARR
HPGLRLHLSVQAAANTPEAIRFYAEAFGVRRVVLPRVLSVEEIARLNREIDVETEVFVFG
GLCVMTEGRCALSSYATGKSPNLTGVCSPPSHVAYEEAADGSLLAHLGGFTIDRFAAGEP
AGYPTLCKGQFAATGKTGYLFEDPVSLNAATLLPALQAAGVTALKIEGRQRGKAYVASVV
RAFRRAVDALAQGNQVTDLSAELAALAEGGRQTTGAYRKTWR
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgaacgccgcgacacgctccgctcccgcccaacggcatcccctcgagctggtctgcccc
gccggcacgccggcggccctgcgggctgccgtcgatgcgggcgcccatgccatttattgc
ggcttcaacgacgagaccaacgcccgcaacttccccggcctcaatttctcgggcccggaa
ctcgccgccggcatagactacgcccaccggcacggcgcgaaggtgctggtcgccatcaac
acattcgcccggcccggagccctggacatctggcagaaggccgtcgacaccgccgccggc
gccggtgcggatgcggtcatcgccgccgacctcgcagtgctcgaccatgcggcacgccgc
catcccggcctgcggctgcacctgtcggttcaggcggctgccaatacgcccgaagcgatc
cgtttctacgccgaggccttcggcgtccggcgcgtggtgctgccgcgggtgctgtcggtg
gaggagatcgcccggctgaaccgcgagatcgacgtcgagaccgaggtcttcgtcttcggc
gggctgtgcgtcatgacggaaggccgctgcgcgctgtcctcctatgccaccggaaagtcg
cctaacctgaccggcgtctgttcgccgcccagccacgtcgcctatgaggaggccgcggac
ggatccctgcttgcccacctcggcggcttcaccatcgaccgcttcgccgccggcgagccg
gccggctatccgaccctgtgcaagggccagttcgccgccacgggcaagacgggctacctg
ttcgaggacccggtcagcctgaacgccgccaccctgctgccggccctgcaggcggctggc
gtcaccgccctgaagatcgagggccgccagcgcggcaaggcctacgttgccagcgtcgtg
cgcgccttccgccgagccgtcgatgcgctggcgcagggaaaccaggtgacggacctttcg
gccgaactcgctgcactcgccgaaggcggccggcagaccaccggcgcctaccggaagacc
tggcgctga

KEGG   Polymorphum gilvum: SL003B_0556
Entry
SL003B_0556       CDS       T01458                                 
Name
(GenBank) Putative lipid carrier protein-like protein
  KO
K24843  2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) accessory factor UbiT
Organism
pgv  Polymorphum gilvum
Pathway
pgv00130  Ubiquinone and other terpenoid-quinone biosynthesis
pgv01100  Metabolic pathways
pgv01110  Biosynthesis of secondary metabolites
pgv01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    SL003B_0556
SSDB
Motif
Pfam: SCP2 CHASE7
Other DBs
NCBI-ProteinID: ADZ68989
UniProt: F2J407
LinkDB
Position
complement(585232..585741)
AA seq 169 aa
MKPLPHWPLELALTRLVRQFVQRRPDLIARLGATAQVPIAVSPSDLPVAFVVRLGGRQSR
IDVVNRDRIEGAAARIEGPLLILLGLFDGSYDGDAAFFARDITIEGQTEHVLALRNTLEE
ADLTPAEFVGLNGPVAEIVNRRTAQALDLARRLVGAPAVEQRSRAGAVR
NT seq 510 nt   +upstreamnt  +downstreamnt
atgaaacccctgccacactggccgctggaactggccctgacccgcctcgtgcggcaattc
gtccagcgccgtccggatctcatcgcgcgactgggggcgaccgcgcaggtgccgatcgcc
gtgtctccttccgatcttccggtcgccttcgtcgtccgcctcggcggccggcagtcgcgc
atagacgtcgtcaacagagaccggatcgaaggagcggcggcccgcatcgaaggcccgttg
ctcatcctgctcggcctgttcgacggcagctacgacggcgacgccgccttcttcgcccgc
gacatcaccatcgagggccagaccgagcacgttctggcgctgcgcaacacgctggaggaa
gcggacctgacgcccgccgaattcgttggcctgaacggccccgtggccgagatcgtgaac
cggcggacggcgcaggcgctcgacctcgcccgccggctggtcggggcgcccgccgtcgag
cagcgctcgcgcgcaggggccgtgcgatga

KEGG   Polymorphum gilvum: SL003B_2242
Entry
SL003B_2242       CDS       T01458                                 
Symbol
ubiF
Name
(GenBank) 2-octaprenyl-6-methoxyphenol hydroxylase, putative
  KO
K03185  2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
Organism
pgv  Polymorphum gilvum
Pathway
pgv00130  Ubiquinone and other terpenoid-quinone biosynthesis
pgv01100  Metabolic pathways
pgv01110  Biosynthesis of secondary metabolites
pgv01240  Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    SL003B_2242 (ubiF)
SSDB
Motif
Pfam: FAD_binding_3
Other DBs
NCBI-ProteinID: ADZ70667
UniProt: F2IZU1
LinkDB
Position
complement(2369312..2370469)
AA seq 385 aa
MTAALLFARRGFATALVAPQVNLQDARTTALLEASVRLLRSLDLWDALEPRSAPLAHMRL
IDDTGRLIRAPEVTFDAAELGLEAFGYNILNRDLNAVLMAAVEAESGLTWLQDTAASVRP
GADRVDLSLASGTAVAARLVVGADGRESLVREAAGIATRRWTYPQKALVLNLDHSRPHST
ISTEFHTPTGPFTLVPLPGCMSSLVCVVEPETADRLAALDDAALARELERRAHSILGAFT
IAGTRQLYPLSGLVATSVASARCALVGEAAHVFPPIGAQGLNLGLRDVADLVETVDRARR
RGEDIGGAAVLARYEATRRSDIASRTAAVDLLNRSLLSGFLPVQALRSVGLYLAGRIGPL
RRLLMREGITPRAARLAPPVWRAAG
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgaccgccgccctcctgttcgcgcgacgcgggttcgcgaccgcactggtcgctccgcag
gtcaaccttcaggacgcccgcacgaccgcgctgctggaggcttccgtccggttgctgcgc
tcgctcgacctgtgggacgcgctggagccccgctcggccccgcttgcgcacatgcgcctg
atcgacgacaccggccggctgatccgggcgcccgaggtcaccttcgacgccgccgaactc
ggcctggaggccttcggctacaatatcctcaaccgggatctcaacgccgtgctgatggcc
gcggtcgaggccgaatcggggctgacctggcttcaggacactgccgcctcagtccgcccc
ggcgccgaccgggtcgacctgtcgctcgcctccggcaccgccgtcgccgcccgcttggtg
gtgggggccgacggacgcgaatcgctggtgcgcgaggccgccggcatcgcgacgcggcgc
tggacctatccgcagaaggcgctggtgctcaatctcgaccatagccgcccgcacagcacc
atctcgaccgaattccacaccccgacgggcccgttcacgctggtgcccctgcccggctgc
atgtcgtcgctggtctgcgtggtcgaaccggaaaccgcagaccggctcgccgcgctcgac
gacgcggcgctggcgcgggagttggagcgccgtgcccactcgatcctgggggcgttcacg
atcgccggcacgcgccaactctatcccctgtccggcctcgtcgcgacgtctgtggcctca
gcccgctgcgcgctggtcggcgaggccgcgcacgtgtttccgccgatcggcgcccaaggc
ctcaacctcggcctgcgcgacgtcgcggatctggtggaaacagtggatcgggcacgtcgg
cgcggcgaggacatcggaggcgccgccgtgctcgcccgctacgaggccacccggcgcagc
gacatcgccagccgcacggccgcggtcgacctgctgaaccgttcgctgctgtccggcttt
ctgcccgtgcaggcgctgcgcagcgtcgggctctatctcgccggccggatcggcccgctg
cggcgcctgctgatgcgcgagggcatcacgccgcgggccgcgcggctggccccgccggtg
tggcgcgcggccggctag

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