Polymorphum gilvum: SL003B_0125
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Entry
SL003B_0125 CDS
T01458
Name
(GenBank) Diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv00300
Lysine biosynthesis
pgv00470
D-Amino acid metabolism
pgv01100
Metabolic pathways
pgv01110
Biosynthesis of secondary metabolites
pgv01120
Microbial metabolism in diverse environments
pgv01230
Biosynthesis of amino acids
Module
pgv_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SL003B_0125
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SL003B_0125
Enzymes [BR:
pgv01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
SL003B_0125
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
PPR_long
Motif
Other DBs
NCBI-ProteinID:
ADZ68564
UniProt:
F2IZE1
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All DBs
Position
129271..130545
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AA seq
424 aa
AA seq
DB search
MHHFDYRDGALFAEDVPVAAIAEAVGTPFYCYSTATLTRHYEVFSSAFEGIPSLVCYAMK
ANSNQAVLATLARLGAGMDVVSEGELRRARAAGVPADRIMFSGVGKTEAEQALAIDEDIL
CFNVESEPELVQLSRVATEKGRTARVSLRINPDVDARTHKKISTGKAENKFGIPWQRARA
LYAEAGELPGIEVTGLDMHIGSQITELEPFDAAFARLGDLVRDLRGDGHHIEHIDLGGGL
GIPYVTDNAPPPHPVEYAAVVKKHVDKLGCRIIFEPGRLIAGNAGILVTRVIYVKEGHDK
TFVIVDAAMNDLIRPTLYDAYHEVRPVRAAPADARRIRADVVGPVCETGDFLAHDRDIPE
VGQGDMLAVFSAGAYGAVQAGTYNSRLLIPEVLVNEGEFAVVRPRPSYDDLIGLDRLPSW
LAEA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgcatcacttcgactacagggacggcgccctcttcgccgaagatgtgccggtcgccgcc
atcgcggaagccgtcgggacgccgttctactgctattcgaccgcgacgctgacgcgtcac
tacgaggtgttttcctccgccttcgagggcattccgtcattggtctgctatgccatgaag
gcgaactcgaaccaggccgtgctggcgacgctggcccgactcggcgccggcatggacgtc
gtctcggaaggcgagttgcgccgggctcgcgccgccggcgtgccggccgaccggatcatg
ttctccggcgtgggcaagaccgaggccgagcaggcgctggcgatcgacgaggacatcctg
tgcttcaacgtggagtccgaacccgaactcgtccagctgtcgcgggtcgccacggaaaag
gggagaacggcgcgggtgtcgctgcgcatcaaccccgacgtcgatgccaggactcacaag
aagatctcgacgggcaaggcggagaacaagttcggcattccctggcagcgcgcgcgcgcg
ctctatgcggaggcaggagaactgccgggcatcgaggtcaccggcctcgacatgcacatc
ggctcgcagatcaccgaactcgagcccttcgatgccgccttcgcgcggctcggcgacctg
gtccgcgatctgcgcggcgacggtcaccacatagagcacatcgatctcggcggcggtctc
ggtattccctatgtcaccgacaacgcaccgccgccgcatccggtcgaatatgccgccgtc
gtcaagaagcacgtcgacaagctgggttgccggatcatcttcgagccgggccggctgatc
gccggcaatgcgggcatcctggtcaccagggtgatctacgtgaaggaaggtcacgacaag
accttcgtgatcgtcgacgcggcgatgaacgacctgatccgaccgaccctctacgacgcc
taccacgaggtgcggccggtgcgggcggcacccgccgatgcacgccgaatcagggccgac
gtggtcggccccgtgtgcgagaccggcgacttcctcgcccacgaccgcgacattccggag
gtcggccagggagacatgctcgccgtgttttccgccggcgcctatggcgcggtccaggcc
ggaacctacaattcccgcctgctgatccccgaagtgctggtcaacgaaggcgaattcgcc
gtggtgcggccgcggccgagctacgacgacctgatcggcctcgaccgcctgccgtcctgg
ctcgccgaagcgtga
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