Polymorphum gilvum: SL003B_1359
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Entry
SL003B_1359 CDS
T01458
Name
(GenBank) DNA helicase II protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv03420
Nucleotide excision repair
pgv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SL003B_1359
03430 Mismatch repair
SL003B_1359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgv03400
]
SL003B_1359
Enzymes [BR:
pgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SL003B_1359
DNA repair and recombination proteins [BR:
pgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SL003B_1359
MMR (mismatch excision repair)
Other MMR factors
SL003B_1359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
DUF3553
AAA_11
AAA_25
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADZ69787
UniProt:
F2J291
LinkDB
All DBs
Position
1463341..1465779
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AA seq
812 aa
AA seq
DB search
MTEPSGYSDDWSAIDAGYDAAPAAPARAGGGIAARALAARRGPDYLAGLNPEQRQAVETI
DGPVLVLAGAGTGKTRVLTTRIAHILSSGRAWPSQILAVTFTNKAAREMRERIGHLIGGN
VDGMAWLGTFHSICVKILRRHAELVGLSSGFSILDTDDQLRLMKQVIQAEGLDDKRWTAR
AFASLVDGWKNRALTPKDVPEGEARAFGNGKGRKLYAEYQDRLSVLNAADFGDLLLHVIT
LFKTHPDVLADYQRRFRFMLVDEYQDTNIAQYLWLRLLAQGNPNICCVGDDDQSIYGWRG
AEVDNILRFEHDFAGATVIRLERNYRSTSHILAAASHLIAHNEGRLGKTLFTDDADPEAE
PVCVASAWDSEEEARSIGDEIEALQARGHSLDQIAILVRASFQMREFEDRFVTLGLNYRV
IGGPRFYERMEIRDAMAYFRCIAQPADDLAFERIVNTPKRGLGEATLKIVHELARAERIP
LMQAAAQLCLTEEIKPKARKALADLLAAFERWRAQLGAMKHTELAEIVLDESGYTEMWRA
DRSAEAPGRLDNLKELVRSMEEFESLAGFLEHIALVMDRDNAEAGEAVSIMTLHSAKGLE
FDTVFLPGWEEGLFPHQRALDESGRAGLEEERRLAYVGITRARKRAKIWFASNRRIHGLW
QSSIPSRFLDELPEAHVEVVEPSTRYGGYGGGGYGASRFDARDPFQSGSYSTPGWQRAQR
ARAAQGGFAEAGGFARADMRSARARQQGPLTIEGELVARSVGDGVSDYAVGERVFHLKFG
YGAIASIEGNKLTIDFEKAGRKRVLDSFVERH
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagccttccggctattccgacgactggagcgccatcgacgccggctacgacgcg
gcgccggccgcgcccgcgcgggcgggcgggggcatcgccgcgcgggcgctcgctgcccgg
cgcgggcccgactatctcgccggcctcaacccggagcagcgccaggcggtcgagaccatc
gacggacccgtcctggtgctcgccggtgccggcaccggcaagacgcgggtgctgaccacg
cgcatcgcccacatcctgtccagcggccgcgcctggccgtcccagatcctcgccgtcacc
ttcaccaacaaggcggcgcgcgagatgcgcgagcgcatcggccacctgatcggcggtaat
gttgatggcatggcctggctcggcacgttccattcgatctgcgtcaagattctgcgccgg
catgccgaactggtgggtctgagctccggcttctcgatcctcgacaccgacgaccagctg
cggctgatgaagcaggtgatccaggccgaggggctcgacgacaagcgctggaccgcgcgc
gccttcgccagcctcgtcgacggctggaagaaccgcgcgctgacgcccaaggacgtgccc
gagggcgaggcgcgcgccttcggcaacggcaaggggcgcaagctctatgccgagtaccag
gaccgtctgtcggtgctcaacgccgccgacttcggcgacctgctgctgcacgtcatcacc
ctgttcaagacccatccggatgtgctcgccgactaccagcggcgcttccgcttcatgctg
gtcgacgagtaccaggacaccaacatcgcccagtacctgtggctcaggctgcttgcgcag
ggcaatcccaacatctgctgcgtcggcgacgacgaccagtcgatctacggctggcgcggc
gcggaggtcgacaacatcctgcgcttcgagcacgactttgccggcgccacggtgatccgg
ctggagcgcaactaccgctcgaccagccacatcctcgccgccgcctcgcatctgatcgcc
cacaacgagggccggctcggcaagaccctgttcaccgacgacgccgatccggaggccgaa
ccggtctgcgtcgcctcggcctgggattcggaagaggaggcgcgctcgatcggcgacgag
atcgaggcgctgcaggccagggggcattcgctcgaccagatcgccatcctggtgcgcgcg
tcgttccagatgcgcgagttcgaggaccgtttcgtcacgctcgggctcaactaccgggtc
atcggcggcccgcgcttctacgagcgcatggagatccgcgacgccatggcctatttccgc
tgcattgcgcagccggccgacgacctggccttcgagcgcatcgtcaacacgcccaagcgc
gggctcggcgaggcgacgctgaagatcgtccacgaactggcacgcgccgaacgcattccg
ctgatgcaggcggcggcgcagctgtgcctgaccgaggaaatcaagcccaaggcgcgcaag
gcgctggccgacttgctcgccgccttcgagcgctggcgcgcccagctcggggccatgaag
cataccgagctcgccgagatcgtgctcgacgagagcggctacaccgagatgtggcgtgcc
gaccgctcggccgaggcgccgggccggctcgacaacctgaaggaactcgtccgctcgatg
gaggagttcgagtccctggccggcttcctggagcacatcgccctggtcatggaccgcgac
aacgccgaggcgggcgaggcggtgtcgatcatgacgctgcattcggccaaggggctggaa
ttcgacaccgtgttcctgcccggctgggaggaaggcctgttcccgcaccaacgggcgctc
gacgagagcggccgggcggggctggaggaggagcgccggctcgcctatgtcggcatcacc
cgcgcgcgcaagcgggcgaagatctggttcgcctccaaccggcgcatccacggcctgtgg
cagtcgtcgatcccctcgcgcttcctggacgaactgcccgaggcccatgtcgaggtcgtc
gagccgtcgacccgctacggcggttacggcggcggcggttatggcgcgtcgcgcttcgat
gcgcgcgacccgttccagtccggatcctattcgacgcccgggtggcagcgcgctcagcgc
gccagggcggcccagggcggttttgccgaggccggaggctttgcgcgcgccgacatgcgc
tcggcgcgcgcgcgccagcagggaccgctgaccatcgagggcgaactggtcgcccgctcg
gtcggtgacggggtctccgactatgcggtcggcgagcgggtgttccatctgaagttcggc
tacggcgccatcgcctcgatcgagggcaacaagctgaccatcgatttcgagaaggccggc
cgcaagcgcgtgctcgacagcttcgtcgagcggcactga
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