Polymorphum gilvum: SL003B_1460
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Entry
SL003B_1460 CDS
T01458
Symbol
lcfA
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv00061
Fatty acid biosynthesis
pgv00071
Fatty acid degradation
pgv01100
Metabolic pathways
pgv01212
Fatty acid metabolism
pgv02024
Quorum sensing
pgv04146
Peroxisome
Module
pgv_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SL003B_1460 (lcfA)
00071 Fatty acid degradation
SL003B_1460 (lcfA)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SL003B_1460 (lcfA)
09145 Cellular community - prokaryotes
02024 Quorum sensing
SL003B_1460 (lcfA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pgv01004
]
SL003B_1460 (lcfA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgv04147
]
SL003B_1460 (lcfA)
Enzymes [BR:
pgv01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SL003B_1460 (lcfA)
Lipid biosynthesis proteins [BR:
pgv01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SL003B_1460 (lcfA)
Exosome [BR:
pgv04147
]
Exosomal proteins
Exosomal proteins of breast milk
SL003B_1460 (lcfA)
Exosomal proteins of breast cancer cells
SL003B_1460 (lcfA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADZ69888
UniProt:
F2J381
LinkDB
All DBs
Position
1562376..1564049
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AA seq
557 aa
AA seq
DB search
METAMTTAEEWCAAFTARATHEYLEDAVRSFPGRPAVDFLGKAWTYREIGELVNRTAAGL
QGLGIGKGTKVGLCLPNTPYYTIFYFAVLKIGGTVVNFNPLYVEREIAFQARDAEVRIMV
TLDLKVIYDKVEAVRREGVFDRIIVCPMADILPQPKKALFTLFKGKERAKVAEDAAHVRF
AGLVARGGAPKAVTIDPDTDVAVLQYTGGTTGVPKGAMLTHRNLSANIEQMRDIFHSARP
GEERMLCVLPFFHVFAMTVAQNLAVILGAEMVLMPRFELKMLLDTIRRTKPTLFPGVPTI
YTAINNSPMTPKYDLTSIKLCISGGAPLPVEVKETFEALTGCMLVEGYGLTESSPVVAVN
PFDDTRRAGSIGRLAPGTRAEFRSLEDRHTAVVLGEKGELCVRGPQVMLGYWKRPDETAQ
TIKDGWLHTGDVGYQDADGFIYLVDRIKDLILCSGYNVYPRMIEEALYQHDAVEEAIVIA
IPDTYRGQAPKAFVKLRAGAVLTAEELKEFLKDHLSAIEMPREIEFRDALPKTMVGKLSK
KELIEEEAARRAAAPAV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttggagaccgccatgacgacagcggaggaatggtgcgccgccttcacggcccgcgccacc
catgaatatctggaggacgctgtccggtcttttcccggccggcccgcggtcgacttcctg
ggcaaggcctggacctatcgcgagatcggcgagctggtgaaccggaccgccgccgggctt
cagggcctcggcatcggcaagggcaccaaggtcggcctgtgcctgccgaacacgccttat
tacacgatcttctatttcgccgtgctcaaaatcggcggcacggtggtgaacttcaatccg
ctctacgtcgagcgcgagatcgccttccaggcgcgcgacgccgaggtgcggatcatggtc
acgctggatctgaaggtgatctacgacaaggtcgaggcggtgcgccgcgaaggcgtgttc
gaccgcatcatcgtctgcccgatggccgacatcctgccgcagccgaagaaggcgctgttc
accctgttcaagggcaaggagcgggcgaaggtggctgaggacgcggcgcatgtgcgcttc
gccggcctcgtcgccaggggcggcgcgccgaaggcggtgacgatcgatccggacaccgac
gtcgcggtgctgcagtataccggcggcacgaccggcgtgccgaagggagcgatgctgacg
catcgcaacctgtcggccaacatcgagcagatgcgcgacatcttccactcggccaggccc
ggcgaggagcggatgctgtgcgtgctgccgttcttccacgtcttcgcgatgacggtggcg
cagaacctcgccgtcatcctgggcgcggaaatggtgctgatgccgcgcttcgagctgaag
atgctgctcgacacgatcaggcggacgaagccgaccctgttcccgggcgtgccgacgatc
tacacggcgatcaacaactcgccgatgacgccgaaatacgacctgacgagcatcaagctg
tgcatctccggcggcgcgccgctgccggtcgaggtgaaggagacgttcgaggcgctgacc
ggctgcatgctggtcgagggctacgggctgaccgagtcctcgccggtggtggcggtgaac
ccgttcgacgacacgcgtcgggccggctcgatcggccggctggcgccgggcacgcgggcg
gaattccgcagcctggaggaccggcacacggcggtcgtcctgggcgagaagggcgagttg
tgcgtgcgcgggccgcaggtcatgctcggttactggaagcggcccgacgagacggcccag
accatcaaggacggctggctgcacaccggcgacgtcggctaccaggacgccgacggcttc
atctatctggtcgaccgcatcaaggacctgatcctgtgttcgggctacaacgtctatccg
cgcatgatcgaggaggcgctgtaccagcacgacgcggtcgaagaagcgatcgtcatcgcc
ataccggacacctatcgcggccaggcgccgaaggcgttcgtcaagctgcgcgccggcgcg
gtgctgaccgcggaggagctgaaggagtttctcaaggaccacctgtcggcgatcgagatg
ccgcgcgagatcgagttccgtgatgccctgcccaagaccatggtgggcaagctgtccaag
aaggaactgatcgaggaggaggcggccaggcgcgccgcggcgccggcggtctga
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