Polymorphum gilvum: SL003B_1730
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Entry
SL003B_1730 CDS
T01458
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SL003B_1730 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgv03021
]
SL003B_1730 (rpoB)
03400 DNA repair and recombination proteins [BR:
pgv03400
]
SL003B_1730 (rpoB)
Enzymes [BR:
pgv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SL003B_1730 (rpoB)
Transcription machinery [BR:
pgv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SL003B_1730 (rpoB)
DNA repair and recombination proteins [BR:
pgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SL003B_1730 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADZ70157
UniProt:
F2J5S4
LinkDB
All DBs
Position
1827071..1831207
Genome browser
AA seq
1378 aa
AA seq
DB search
MTHTFNGRKRVRKFFGSIRDVTAMPNLIEVQKASYDQFLQVDEPKGGRSDEGLQAVFQSV
FPISDFAGTALLEFVRFEFEAPKYDVEECRQRGMTYAAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVYMGDMPFMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGLDGEEILNTFYKRIEYSRSG
KGAWRMPFDGDRLKGTKASYDLVDADSGEVVIEAGRKITARTIKQLTEKGVKALKVTDED
LHGQYLAEDMVDPSTGEIYAEAGDEINAKILDELVQRGYEDISVLDIDHVNTGAYIRNTL
AVDKNESREDALFDIYRVMRPGEPPTIDSAEAMFQSLFFDAERYDLSAVGRVKMNMRLDL
ECEDTVRTLRKEDILAVIRLLLELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRM
ERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY
RKVKDGVVSNEVVYLSAMEEAKHYVAQSNAEMDESGRFVEDLVTCRHAGENMLVPSDRVD
LMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVARD
SGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLMKFQRSNQNTCINQRPLVR
VGDVISKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSERIVRDDVFTSIH
LEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAELKPGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTVVEVRVFNRHGVEKDERAMAIEREE
IERLAKDRDDEQAILDRNVYGRLAEMLIGKTAIGGPKGSKKDVVISGDVLNEFPRSQWWQ
FAADDEKFMSEVEALRGQYDESRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKINPNEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGW
ACAGMGRKIGELYDQYRKSGEISALKGQIVEIYGDNLKGDPVKEFDDESIVRLADQLKKG
VSIATPVFDGAHEPDIVDMLKVADLDPSGQSVLYDGRTGEPFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELQQTEVPQITDEPAADAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgacccacacgttcaacggtcgcaagcgtgtccggaaatttttcggatcgatccgcgat
gttacggcgatgcccaacctcatcgaggtgcagaaggcgtcctacgaccagttcctgcaa
gtcgacgagcccaagggtgggcgcagcgacgaaggcctgcaggccgtgttccagtccgtg
ttcccgatttccgacttcgcgggcaccgcgctgctggaattcgtgcggttcgagttcgaa
gcgccgaaatacgacgtcgaggaatgccgccagcgcggcatgacctatgccgcgccgctg
aaggtgacgctgcggctcatcgtgttcgacgtcgacgaggacaccggcgccaaatcggtc
aaggacatcaaggagcaggacgtctacatgggcgacatgcccttcatgacggacaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgctctcccggt
gtgttcttcgatcacgacaagggcaagacccactcctccggcaagcttctgttcgccgca
cgcgtgattccctatcgcggctcctggctcgatatcgagttcgacgccaaggatatcgtc
tacgcgcgcatcgaccggcgccgcaagatcccggtcacgtcgctgctgatggcgctcggc
ctggacggcgaggaaattctcaacaccttctacaagcgcatcgagtacagccgctcgggc
aaaggcgcctggcggatgccgttcgatggcgatcgcctgaagggaaccaaggcctcctat
gatctcgtcgatgccgatagcggcgaggtggtcatcgaggccggccgcaagattaccgcg
cgtacgatcaagcagctcaccgaaaagggtgtcaaggcccttaaggtgaccgacgaggac
ctgcacggccagtatctggccgaggacatggtcgatccgtcgaccggcgagatctatgcg
gaagccggcgacgagatcaacgcgaagatcctcgacgagctggtccagcgcggctacgag
gacatctcggtgctcgacatcgatcatgtcaacaccggcgcctatatccgcaacaccctg
gcggtcgacaagaacgagtcccgcgaggatgccctgttcgacatctaccgcgtcatgcgc
ccgggcgagccgcccaccatcgacagcgcggaagcgatgttccagtcgctgttcttcgac
gccgaacgctacgacctgtcggcggtcggccgcgtcaagatgaacatgcgcctcgacctg
gagtgtgaggataccgtccgcacgctgcgcaaggaggacatccttgcggtcatccggctg
ctgctggagctgcgcgacggcaagggcgagatcgacgacatcgacaacctcggcaaccgg
cgcgtgcgctcggtcggcgagcttatggagaaccagtaccgcgtcggcctgctgcgcatg
gagcgcgcgatcaaggagcgcatgagttcggtcgagatcgacacggtcatgccgcaggac
ctgatcaacgccaagccggcggcggcggcggtgcgcgagttcttcggctcgtcgcagctc
agccagttcatggaccagaccaatccgctgtctgaagtcacccacaagcgtcgcctgtcg
gcgctcggtccgggcggcctgacgcgcgagcgcgccggcttcgaggtgcgcgacgtgcat
ccgacgcactacggccgtatctgcccgatcgagacgccggaaggcccgaacatcggtctg
atcaattcgcttgcgaccttcgcccgggtcaacaagtacggcttcatcgaaagcccgtac
cgcaaggtcaaggacggcgtcgtgtcgaacgaggtcgtctacctgtcggcgatggaagag
gcgaagcactacgtggcgcagtccaacgccgagatggacgagagcggtcgcttcgtcgag
gacctggtgacctgccgacacgccggcgagaacatgctggttccctcggaccgcgtcgac
ctcatggacgtgtcgccgaagcagctcgtgtcggtggcggcagcgctcattccgttcctg
gagaacgacgacgccaaccgcgcgctgatgggctctaacatgcagcgccaggcggtgccg
ctggtgcgcgccgaggcaccgttcgtcggcaccggcatggagtcgatcgtggcgcgcgac
tcgggtgcggcgatcgcggcccgccgcggcggcgtggtcgaccaggtcgacgcgacgcgt
atcgtcatccgcgccacggaagacctcgatccgtccaagtcgggcgtcgacatctaccgc
ctgatgaagttccagcgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgt
gtcggcgacgtgatcagcaagggcgacatcatcgccgacggtccgtcgaccgatctgggc
gacctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttc
gaggactccatcctgctgtccgagcgcatcgtgcgcgacgacgtgttcacctcgatccac
ctcgaggaattcgaggtcgcggcccgcgacaccaagctcgggccggaggaaatcacgcgc
gacattcccaacgtgtcggaagaggcgctgaagaatctcgacgaggcgggcatcgtctac
atcggcgccgagctgaagccgggcgacatcctggtcggcaagatcacgccgaagggcgaa
agcccgatgacgccggaagagaagctgctgcgtgccatctttggcgagaaggcgtccgac
gtgcgcgacacctcgctgcggctgccgcccggcgtcaccgggacggtcgtcgaggtgcgg
gtcttcaaccggcacggcgtggagaaggacgagcgcgccatggccatcgagcgcgaggag
atcgagcgcctggccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacgtctac
ggccgcctggccgagatgctgatcggcaagaccgcgatcggcggacccaagggctcgaag
aaggacgttgtcatctccggcgatgtgttgaacgagttcccgcgctcgcaatggtggcag
ttcgctgcggacgacgagaagttcatgagcgaggtcgaggcgctgcgcggacagtacgac
gagagccgcaagcgcctggagcagcgcttcatcgacaaggtggagaagctgcagcgcggc
gacgaactgccgccgggcgtcatgaagatggtcaaggtcttcgttgccgtgaagcgcaag
atccagccgggtgacaagatggccggccgtcacggcaacaagggcgtggtgtccaagatc
aacccgaacgaggacatgccgttcctggaagacggcacgcatgtcgatatcgtcctgaac
ccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcctggaaacgcatctcggctgg
gcctgcgccggcatgggccggaagatcggcgagttgtacgaccagtaccgcaagtcgggc
gagatcagcgcgctcaaggggcagatcgtcgagatctacggcgacaacctgaagggcgac
ccggtcaaggagttcgacgacgagagcatcgtgcgccttgccgaccagttgaagaagggc
gtctcaatcgcgacgccggtcttcgacggtgcccatgagcccgacatcgtcgacatgctc
aaggtcgcagacctcgatcctagcggccagtcggtgctctacgacgggcgcacgggcgag
ccgttcgaccgcaaggtgaccgtcggctatatctacatgctcaagctgcaccaccttgtc
gacgacaagatccacgcccgttcgatcggtccctactcgcttgtcacgcagcagccgctg
ggcggcaaggcccagtttggcggccagcgtttcggcgaaatggaggtctgggccctggaa
gcctatggcgcggcctacacgctgcaggaaatgctcacggtcaagtcggacgacgtggcc
ggccgcaccaaggtctacgaggcgattgtccgcggcgacgacacgttcgaggccggcatt
ccggagagcttcaacgtgctcgtgaaggaaatgcgctcgctcggcctgaacgtggaactg
cagcagaccgaggtgccccagattaccgacgagcccgcggctgacgctgcggagtga
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integrated database retrieval system
