Polymorphum gilvum: SL003B_4245
Help
Entry
SL003B_4245 CDS
T01458
Name
(GenBank) Probable atp-dependent dna helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SL003B_4245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgv03019
]
SL003B_4245
03400 DNA repair and recombination proteins [BR:
pgv03400
]
SL003B_4245
Enzymes [BR:
pgv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SL003B_4245
Messenger RNA biogenesis [BR:
pgv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SL003B_4245
DNA repair and recombination proteins [BR:
pgv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SL003B_4245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ADZ72662
UniProt:
F2IVE4
LinkDB
All DBs
Position
4553168..4555030
Genome browser
AA seq
620 aa
AA seq
DB search
MPSPQPLLADTPAPRTVADPHRILQDVFGYASFRGRQQEVVDTLMAGGDAVVLFPTGAGK
SLCYQIPALCRPGTGIVISPLIALMKDQVGALKAAGVRAAALNSAISTEEQAAIGAALRR
GELDLLYVTPERVATIGFARLMEGVPIALFAIDEAHCVSQWGHDFRPEYLMLASLAERYP
GVPRVALTATADPHTREDIRLRLKLDTAQVFTTSFDRPNIRYEIVERANQRQQLLDFLAR
HKGESGIVYCLSRAKVDDIAGWLTEKGIRALPYHAGLERETREANQDAFLLEESLVLVAT
VAFGMGIDKPDVRFVAHLDLPSSVEAYYQETGRAGRDGAPAEAWMAYGMADMVQRRRMIA
EGDAPDEVKRAETAKLNALLGICETAGCRRQALLAHFGEDYPKPCGNCDTCLSPVETWDG
TEAAAKFMSAVYRTGQRFGSAHVIDVLLGRENDKIARFGHDRLSVYGIGQEHPAKTWQSV
ARQLVAMGLVGVDHANFGALVLTDEARAVFRNERQVMLRRDRAAASLKRERGGQAGSLAD
DLDQEDRLLFERLRRLRTQIARDNAVPPYVVFPDATLAGIARARPVTPDALLAVSGVGQS
KLERYGEAFLDLVEAFEAGV
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaccgcagccgcttctagccgacacgcccgcgccgcgaaccgtcgcggatccg
caccggatcctgcaggacgtgttcggctatgccagcttccgcggccggcagcaggaagtg
gtcgacacgctgatggcaggcggcgacgcggtggtgctgttcccgaccggcgccggcaag
tcgctgtgctaccagatcccggccctgtgccggccgggtaccggcatcgtcatctcgccg
ctgatcgcgctgatgaaggaccaggtcggcgcgctgaaggcagccggcgtgcgcgccgcc
gcgctgaattcggcgatttccaccgaggagcaggcggccatcggcgcggccctgcggcgc
ggcgagctggacctgctctatgtgacgccggagcgggtggcgaccatcggcttcgcccgg
ctgatggagggcgtgccgatcgcgctgttcgccatcgacgaggcgcattgtgtcagccag
tggggccacgacttccggcccgaatacctgatgctggcatcgctggccgagcgctatccc
ggcgtgccgcgcgtggcgctgacggcgactgccgacccgcacacgcgtgaggatatccgc
ctgcggctgaagctcgacacggcacaggtgttcaccaccagcttcgaccggccgaacatc
cgctacgagatcgtcgagcgggccaaccagcgccagcagctgctcgatttcctcgcccgc
cacaagggcgagagcggcatcgtctattgcctgtcgcgggcgaaggtggacgacatcgcc
ggctggctgaccgaaaagggcattcgcgccctgccctatcacgccggcctggagcgcgag
acgcgcgaggcgaaccaagacgcgttcctgctggaggaaagcctcgtcctcgtcgccacg
gtcgccttcggcatgggcatcgacaagccggacgtgcgtttcgtcgcccatctcgacctg
ccgtcctcggtcgaggcctattaccaggagaccggccgcgcgggccgcgacggcgcgccg
gccgaagcctggatggcctatggcatggccgacatggtgcagcgccggcgcatgatcgcg
gaaggcgacgcacccgacgaggtgaagcgggcggaaacggccaagctgaacgccctgctc
ggcatctgcgagaccgccggctgccggcgccaggccctgctcgcccatttcggcgaggac
tatcccaagccctgcggcaactgcgacacctgcctgtcgccggtggagacctgggacggg
acggaggcggcggccaagttcatgtctgcggtctaccgcaccggccagcgcttcggctca
gcccatgtcatcgacgtgctgctgggcagggagaacgacaagatcgcccgcttcggccac
gaccgactgtcggtctacggcatcggccaggagcatccggccaagacctggcagtcggtc
gcccgccaactggtggcgatggggctggtcggcgtcgaccacgccaatttcggcgccctg
gtgctgaccgacgaggcacgcgcggtgttccgcaacgagcggcaggtgatgctgcgccgg
gaccgggcggcggcgagcctgaagcgggaacgcggcggccaggccggcagtctcgccgac
gacctggaccaggaggaccggcttctgttcgagcggctgcgccggctgaggacgcagatc
gcccgcgataacgcggtgccgccctatgtggtgttcccggacgcgacactcgccggcatc
gcccgggcgcggccggtgacgcccgacgcactgctggccgtgtccggcgtcggccagtcc
aagctggaacgctacggcgaggcgttcctcgacctcgtcgaggccttcgaggccggggtg
tag
DBGET
integrated database retrieval system
