Polymorphum gilvum: SL003B_4301
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Entry
SL003B_4301 CDS
T01458
Symbol
truB
Name
(GenBank) TRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pgv
Polymorphum gilvum
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgv03016
]
SL003B_4301 (truB)
Enzymes [BR:
pgv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SL003B_4301 (truB)
Transfer RNA biogenesis [BR:
pgv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SL003B_4301 (truB)
Prokaryotic type
SL003B_4301 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DUF6226
Motif
Other DBs
NCBI-ProteinID:
ADZ72718
UniProt:
F2IVK0
LinkDB
All DBs
Position
complement(4615228..4616157)
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AA seq
309 aa
AA seq
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MARPKARRNRNPIDGWLVLDKPYGLTSNDALSRIKRIFHPEKVGHAGTLDPRASGCLPLA
FGEATKTVSLVMNGRKVYRFEVTWGAETDTDDTEGMVIASSELRPGPDEIRAVLPEFTGT
ILQVPPKFSAIKVGGERAYDLAREGEVVELEARPIDVHRLDLVECLDADRAVFEAECGKG
TYVRALARDLGRRLGTRGHVTELRRLLVGPFGEADMVGLDELEGAAAEAAGVEDLLDFVL
PVREALEGLPEIEVSADDAGRIRQGVAILLRGRTAPLTCEQAFASHAGVPVAIGSVEKGR
FQPARVLHL
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcccgaaggcccgcaggaaccggaatcccatcgacggctggctggtgctagac
aagccctacggcctgacctccaacgacgccctgtcccggatcaagcggatcttccatccc
gagaaagtcggccatgccggcacgctggatccgcgcgcctccggttgtctgccgctcgcc
ttcggtgaggcgaccaagacggtctctctggtcatgaacggccgcaaggtctaccgcttc
gaagtcacctggggcgcggaaactgataccgacgacaccgagggcatggtgatcgcctcc
tcggagctgcgtcccggtcccgacgagatccgtgcggtactgcccgagttcaccggcacg
atcctccaggtgccgcccaagttctccgccatcaaggtcggcggcgagcgcgcctacgac
ctcgcccgcgaaggcgaggtcgtcgaactggaggcgcggccgatcgacgtgcaccggctc
gacctcgtcgaatgcctcgacgccgaccgggccgtgttcgaagccgaatgcggcaagggt
acctatgtgcgcgcgctggcccgcgatctcggccgccggctgggcacccgcggccatgtg
accgagctgcgacgcctgctggtcggcccgttcggcgaggccgacatggtgggcctcgac
gagcttgagggggcggccgcggaggcggcaggggtggaggacctgctcgatttcgtgctg
ccggtgcgcgaggcgctcgaaggcttgccggagatcgaggtctccgcggatgacgccggc
cgaatccgtcagggcgttgcgatcctgctgcgtggacgcacggcgccactgacctgcgag
caggcctttgccagccacgccggcgtaccagtcgccatcggcagcgtcgagaaggggcgt
ttccagccggcccgcgtcctgcatctttga
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