Pectinophora gossypiella (pink bollworm): 126369859
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Entry
126369859 CDS
T09293
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126369859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126369859
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
126369859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Dis3l2_C_term
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
126369859
NCBI-ProteinID:
XP_049870396
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All DBs
Position
9:complement(5282871..5299739)
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AA seq
977 aa
AA seq
DB search
MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACGICPHKDDEFVLDAKPPSICALFE
DPHYLVLDTNVILHQIDVLEEDALTDVIILQTVLEEVKHQNTAIFQRLLEIIGNKKRRFY
SFVNEHHKDTYVERNPGEKVNDRNDRAIRRAASWYASHLSANKPTSQCVQIVLLTDDENN
RKQAIEEGIVSCTVKDYIENVNGFPGLVDKLSKNVIPESVSKDALYPAHLTPNQIHAGIR
GGQLYQGTFHASRDNFLEATAVVNGFEKPILLQGHIGINRAVDGDVVAIEIFPESEWRKP
SDIVLEDKADDPGDLLEEEAVLLNATKLEKVTDDEITPTGKVVGIIRRKWRQYCGILMPN
RFPGAVRHLFCPAEKRIPRVRIETRQSDVLAAQRILVALDSWPRNSRYPLGHFVRALGPI
GDKDAENEVILLEHDVPHARFSEAVLACLPPDDWTIPPEEIKKRVDLRSICICSVDPPGC
TDIDDALHARPIEGTTDTGLKKFEVGVHIADVTYFVRPDTALDKEAASRSTTVYLVDKRI
DMVPDLLSSNLCSLRGGEERLAFSCVWEIDENANVLSTKFHKSVIKSAAAMTYEEAQIAI
DDSSRHDEIARSLRTLNALAKKLKQRRLDNGALLLASPEIRFQVDSETHDPVEVQAKKIV
DTNSMVEEFMLLANVSVAEKLAAEYPQCALLRRHPAPPPANFHTFLKAARQQGFELDVST
NKSFSKSLSEAVIPERPFFNTLLRIMATRCMQQAQYFSSGSRTQDEFYHYGLACPIYTHF
TSPIRRYADVIVHRLLAACVGADVTHATLLDTRRADALCDNLNYRHRQAQYAGRASVALN
THILFKDRVEIESAVVLAVKRNALQVLIPKYGLERPLLLPSDKFSYNEEEHLQRCGDVVL
RTFDEITVRLSLDSTNLQHRKLVFQLVKPHVPGFSYVPGQEDTPESMEVEEIKDSKESKK
RKEEVKETKSKKKPKKK
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtggactacaaaaacatttttgactaaaacgaaacgcggaaacattctgaagatcgtt
cgcgagcattacctgcgcgatgacctgctgtgtgggtcagctgcctgtggcatctgccct
cacaaagacgacgagtttgttctcgacgccaagccgccgtctatatgcgcgctcttcgaa
gacccacactacttagtactggacacaaatgtgattctgcaccagatagatgttttggaa
gaggatgctcttactgatgttatcatactacaaactgtactagaagaagtgaagcatcag
aatacagccatatttcaacgacttcttgaaataattggcaataagaaaagaaggttttat
tcatttgtaaatgaacatcataaagacacttatgtggagaggaatccaggagaaaaagtc
aatgacaggaatgaccgagctattcgtagagcagcatcctggtatgcatcacatttgtct
gctaacaagccaacaagtcaatgtgtgcagattgtgttgctgacagacgacgaaaataat
agaaaacaggctattgaagagggaattgtttcttgcacagttaaagactatattgagaat
gtaaatggctttcctggccttgtggacaaattgtctaagaatgtgataccagagagtgtt
tctaaggatgctctgtatcctgcacatttgacaccaaaccaaattcatgctggcattcga
ggtggccagttatatcaaggaacattccatgcctccagagataacttcttggaagccact
gctgttgtcaatggatttgaaaagccgattcttttacaaggccacattggcatcaatcgg
gcagtagatggcgatgtggttgctatagaaatattcccagagtcagagtggaggaaaccc
agtgacattgtcctggaggataaggcagatgaccctggggacctgttggaggaagaggcg
gtgttgctaaacgctactaaattggaaaaagtcactgatgacgaaattactcccactggg
aaagttgtgggcattatcagaaggaagtggagacaatactgcggtattctcatgccaaat
agatttccaggtgcggtgcgtcatttgttctgcccggctgagaagcgcattccgcgcgtg
cgcatagagactcgtcaaagcgacgtgctggcggcgcagcggatactggtagcgcttgac
tcgtggcctaggaacagtcgataccctctcggacacttcgtcagggctttaggacctatt
ggcgataaagacgcggagaatgaagtgatcttgttggaacacgacgtgccacacgcgagg
ttcagtgaagccgtgctcgcgtgtctgccgccggatgactggactataccgcctgaggaa
ataaagaaacgcgtggatctgcgttcgatctgcatctgctccgtggaccctccgggctgc
acggatatcgacgacgccctgcacgcgcgacccattgagggcaccactgataccgggctc
aagaagtttgaggtgggagtccatatagcagatgtgacgtacttcgtgcgtcctgatacc
gcattggacaaagaggcggcctcgcggtccaccaccgtgtacttagtggacaagaggata
gacatggtgccagatctcctcagttccaatttatgttcgcttcgcggaggcgaagagagg
ttggcattctcctgtgtttgggaaatcgatgaaaacgccaacgttttatcgactaagttc
cacaagagcgttatcaagtcagcagcggctatgacgtacgaggaggcgcaaattgccata
gacgattcgagtcgccatgacgagatagcgcgctcgttgcgcacgctgaacgcgcttgcc
aagaagctcaaacaacgccgcctggacaacggagcgctgttactagcctcacctgagata
cgcttccaggtggattcagaaacacacgacccggtagaggtgcaagcgaagaagatagtg
gacactaactctatggtggaagagttcatgttgctcgcgaacgtgtcggtggccgagaag
ttggctgcagagtacccgcagtgtgcgctgctgaggcggcaccccgcgccgccgcccgcc
aacttccataccttcctgaaagctgctagacaacagggcttcgaattagacgtgtcgacg
aacaagtcgttctccaagtctctgagcgaggcggtgattccggagcggccgttcttcaac
actctgctgcgcatcatggcgacgcgctgcatgcaacaagctcagtacttctccagcggc
tccaggacacaggacgagttttatcattacggactcgcttgtcctatatacacgcacttc
acctccccgatcagaaggtacgcggacgtgatcgtgcaccggctgctggcggcgtgcgtg
ggcgccgacgtgacgcacgccacgctgctggacacgcggcgcgcggacgcgctctgcgac
aacctcaactaccgccaccggcaggcgcagtacgcgggccgcgcctccgtcgcgctcaac
acccatatcctgttcaaggatagagtggagatagagtcggcggtggtgttagcagttaaa
cggaacgcgctgcaagtgcttatacccaagtacggactggagaggccgctactgctgcct
agtgacaagttctcatacaatgaagaggaacatctacaaagatgtggcgatgtggtactg
aggacatttgatgagataacagtccgtctatccctggacagcaccaacctacaacatagg
aaactcgtcttccaattggtcaagcctcacgtccctggattcagctacgtacccgggcaa
gaggatacaccagaaagtatggaggtggaagaaatcaaagacagtaaagaaagtaagaaa
agaaaagaagaagtaaaagaaactaagagtaagaagaaacctaaaaagaagtag
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