Pectinophora gossypiella (pink bollworm): 126370656
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Entry
126370656 CDS
T09293
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03013
Nucleocytoplasmic transport
pgw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126370656
03015 mRNA surveillance pathway
126370656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126370656
Enzymes [BR:
pgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126370656
5.6.2.5 RNA 5'-3' helicase
126370656
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126370656
mRNA cycle factors
Common to processing body (P body) and stress granule
126370656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
AAA_16
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
UvrD_C_2
AAA_5
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
126370656
NCBI-ProteinID:
XP_049871578
LinkDB
All DBs
Position
11:complement(1735941..1751200)
Genome browser
AA seq
1034 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLATSNQ
VNGLGRTDLSSKISSVTNAIAELQFEEEDEALYSSKELPEHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDATSNFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSGGAGECELRKLSRLREEAGELSAGDERRHRALRRAAERRLLDAADVVCTT
CVGAGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKID
FPWPRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPY
EGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDP
RRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKP
KKLVNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPPRAALQPVPPAAFL
RCGPPRGPGAPPARRRARLSQEPLSQPPALSLSQPASQPDFSQESAAPDCPSQPDGLLSQ
DSTYQGGFRRAAQY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcgtacgggccgagttctcaaacgctcacgtttttggacaccgaagaa
gcggatcttatcggagcagacacccagggctctgaattcgagtttactgacttcaccctt
ccatctcagagccagacacaagcgtcgcaacacgaccatggcttggcaacgtccaaccag
gtgaatggcttgggccggacggatttgtcttctaagatatcgagtgtgactaatgctata
gcagagctacagtttgaggaagaggatgaagcattgtacagtagtaaggagcttcccgaa
catgcgtgtaaatactgtggcattcacgaccccgccaccgtggtcatgtgtaacatctgt
aataaatggttctgcaacggacgtggcaacacgtcaggatctcacatcataaaccatctc
gtgcgagcgaagcacaaagaagcggcgttgcatcgtgacggacctcttggggagacattg
ctggagtgctactcttgcggtgctcggaatgtcttcgtccttggctttatcccagcaaaa
gccgattccgttgttgttcttctgtgccggcaaccctgtgcggcacagagctccctgaaa
gacatgaattgggaccaggagcaatggaagcctcttatttccgaccgtgctttcttgtcg
tggttggtgaaagtcccgtcggaagcagagcaaatgagagcgcgtcaggtgacgccgcaa
cagataggtcgtcttgaagagctgtggcgagacaacgtggacgccaccttccaggacttg
gagaagcccggcgtggatgaggagccccatcaagtgctgctcagatacgaggacggctac
caataccagaacatcttcggtccgctggtgaagctggaagctgattacgacaagcggctg
aaggagtcccagacgcaggagggcatagaggtgcggtgggacgtggggctgaacaagaag
accatcgcctacttcacgctcgccaagactgacagcgacatgaagctcatgcatggagac
gagcttagactcagatacgtgggcgagatgcacaaggcttggtcgggcgtgggccacgtg
atcaaagtgccggacaactacggcgacgacgtgggcctggagctcaagtccggcgccggc
gcaccgctggacgccacctccaactttgtcgtcgacttcatttggaagagcacgagcttt
gatcgtatgcaactagcgctgcgcaagttcgcggtggacgagtcgtcagtttcggggtac
atctatcggcggctgctgggccacgaggtggaggaagtgctcttccgcgtacacctgccc
aaacacttctccgcgcccaacctgcccgacctaaatcgctcgcaggtgtacgcggtgaag
catgcgctgcaacggcctctgtccctcatccaaggcccgcccggcaccggcaagactgtg
acgtcagcgaccatagtgtaccagctggtgcgccagaacggcgggcccgtgctggtctgc
gcgccctctaacactgctgtcgatcagctaaccgagaagatacaccgcactggactcaag
gtggtgcggctgtgcgccaagtcccgcgaggcgatggagtcgtcggtgtcgttcctggcg
ctgcacgagcaggcccgcgcgctgggctcgggcggcgcgggcgagtgcgagctgcgcaag
ctgtcgcggctgcgcgaggaggcgggcgagctgtcggcgggcgacgagcggcgccaccgc
gcgctgcgccgcgccgccgagcgccgcctgctggacgcggccgacgtcgtgtgcaccacc
tgcgtgggcgcgggcgacccgcgcgtggcgcgcatgcgcttccagtccatcctcatcgac
gagggcatgcagtccaccgagcccgagtgcatggtgcccgtggtgctgggcgcgcgccag
ctcatcctggtgggcgaccactgccagctggggcccgtcgtcatgtgcaagaaggcggcc
aaggcgggcctcagccagtcgctgttcgagcggctcgtcgtgctcggcatccgccccttc
cggctcgaggtgcagtaccgcatgcacccggagctgtcccgtttcccgtccgacttcttc
tacgagggctcgctgcagaacggcgtcagcgccgaggagcgccggctgcacaagatcgac
ttcccgtggccgcggcccgaccggcccatgttcttctacgtgacgcagggccaggaggag
atcgccggctcgggcacctcgtacctcaaccgcaccgaggccgccaacgtggagaagctc
accacgcgcttcctcaaggcgggcgtgcgccccgagcagatcggcatcatcacgccctac
gagggccagcgctcctacctcgtgcagcacatgcagtaccagggcagcctgcacgccaag
ctgtaccaggagatcgaggtggccagcgtggacgcgttccagggccgcgagaaggacatc
atcatcatgtcgtgcgtgcgctccaacgagcaccagggcatcggcttcctgagcgacccg
cgtcggctcaacgtggcgctcacgcgcgccaagtacggcctcatcgtcgtcggcaacccc
aaggtgctcagcaagcagccgctgtggaaccacctgctcgccttctacaaggagcggcgc
gtgctcaccgagggcccgctgtccaacctgaaggagtctgcgatccagttcgccaagccc
aagaagctggtgaacgcgcagaacccgggctcgcacttcatgtcgacgtccatgttcgac
gcgcgcgaggccatggtgccgggctcggtgtacgaccgcgcgcggccgttgcgggacccg
ctggcctacgtgggccccccgcgggccgcgctgcagcccgtgccccccgccgccttcctg
cgctgcgggcccccccgcgggcccggggccccgccggcgcggcgccgcgcgcggctgtcg
caggagccgctgtcgcagccgccggcgctgtcgctgtcgcagccggcgtcgcagcccgac
ttcagccaggagtcggcggcgcccgactgcccgtcgcagccggacgggctgctgtcgcag
gactccacgtaccagggcgggttccgccgcgcggcgcagtactga
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