Pectinophora gossypiella (pink bollworm): 126371204
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Entry
126371204 CDS
T09293
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126371204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgw03400
]
126371204
DNA repair and recombination proteins [BR:
pgw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126371204
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
MnmE_helical
AAA_27
Motif
Other DBs
NCBI-GeneID:
126371204
NCBI-ProteinID:
XP_049872412
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Position
12:8669209..8716661
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AA seq
916 aa
AA seq
DB search
MSSLQPIHALNLDSEQQQAFIAFFNSLPEKPPTTVRIFDRNDYYSVHGVDATTSAREVFS
SISNIKKMGLKPNLLDYLVLSKGNFEILIRKLLLVRRYRVEIYVKDGPGRNSEWVLKYKG
SPGCLTQLEEVLSEGLGATDEQTPCLMSVHIKTDSVTKGRLLGVACVTAGDYQMSVAEFT
DDDLLTELETITVQMAPSECLVPSSDNEDYKALKKVMERAAVTVTKLKNSDFSTEGLMQD
LNRLLKFKEDQQQDANAFPETRKNVAMSSLAAAISYAGLLTENTNFGRFRLSTIQADCFL
HLDAAALSALNVLPELGDNSHAPARSLLGLLDRCRTQQGKRLLAQWLRQPLRDINLINER
LDVVELLVNNSQLRLQLHEDHLRRIPDLQALARRLTRKKANLHDCYKIYQAINRLPALLQ
CLAEAKHPTVHSSLEEPIAELNEDLNKYLQMIEATVDMDAVERGDFLVKPSFDEQLQNLS
EQLDSLQNSADKELNRAARDLGLDAGKTIKLDSNPQNGFYFRVTMKEEQSLRGNKKYTII
DAVKGGVRFKTNALENITDEYLQTKASYEKEQDKVVAEIVGIAAGYSECLFCLSHILSRL
DVLVSFAVAASTAPYPYCRPVITEELDEFVLKEVRHPCLEVQEGISYIPNDVEFKRGSCL
LHVVTGANMGGKSTWMRSCGVAALLAHAGCMVPATTAIVPRLRALCARVGASDREDKGQS
TFMLEMVETAAILKTATPDSLVLVDELGRGTSTYEGCGIAWAVAEELATNSKCFCLFATH
YHELTRLESLHPGVIVNSHAEATVVDQQLLLLHKIVPGPATHSLGLHVAKLADLPDSIIE
YAEAKQAQLETNLFEAETAVKSQETKEGQTIILDFLKKCKEIQESTASDEDMMKQINSLK
QNVLRQNNKYVQSLLA
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcattacagcccattcacgcactgaatttagattcagaacaacaacaagctttt
atagcattcttcaattcattacctgagaaaccaccaacgacagtgcgtatattcgaccgc
aatgactactacagcgtgcacggcgtggacgcgaccacatcggcaagagaggtgttctcc
tccatatccaacatcaagaagatgggccttaagcccaacctgctcgactacctcgtgctc
tctaaaggaaacttcgagatcttgatcaggaaactgttgctggttaggcgctacagagta
gaaatctacgtgaaggacggcccgggaaggaatagtgaatgggtactcaagtataagggg
tcgccgggatgcttgacacagttggaagaggtcctcagtgagggcctaggggccactgat
gaacagacgccttgccttatgtctgtgcatattaaaactgattctgtaaccaagggtcgt
ctcctaggtgtggcttgtgtaactgcgggtgactatcagatgtctgtagcggagttcaca
gacgacgacttgctgactgagttggagacgatcaccgtgcaaatggcgccttcagagtgc
ctcgtgcccagtagcgataatgaagattacaaagctctgaaaaaggtgatggagagagct
gccgtcacagtgaccaagttgaagaacagtgatttctcaacagaagggctgatgcaggac
ttgaaccgcctactgaagttcaaagaggaccaacaacaagacgccaatgcctttcctgaa
accaggaagaatgttgccatgtccagtttagctgctgctataagctacgctggattgttg
acggaaaacactaattttggcaggttccggctatcaacaatccaagcggattgcttctta
cacctggacgcggcggcgctgtcagctctcaacgtgctgccggagttaggagataactca
catgcacccgcgaggagcttgctcggcttgctggacagatgtcgcacgcagcaggggaaa
cgtctcctagcccaatggctgcggcaacctctgcgcgatattaacctgatcaacgaacgg
ctggacgtagtggaactgctagtgaacaactctcagcttcgtctgcaacttcatgaggac
cacctgaggaggataccggacctgcaagccttggctcggcgtctcaccaggaagaaggcc
aatttgcacgattgctataaaatatatcaggccataaatagactaccagcgctgttacaa
tgtcttgctgaagcgaagcatccgacagttcactcctcgctggaagaacctattgctgaa
ctgaatgaggatttgaacaaatatctacaaatgattgaagctactgtcgacatggatgct
gttgaaagaggtgacttcttagtgaaaccatcattcgacgagcaacttcaaaacttaagt
gaacaactggattcgcttcaaaattcagctgacaaagaattgaatagagctgcgagagac
ctgggtctagacgccggcaagactatcaaattggacagcaatcctcagaacggcttctac
tttagggtaacaatgaaagaagaacagtcgttgcgtggcaacaagaagtataccatcata
gatgctgtcaaaggtggagttaggtttaaaaccaacgctctggagaacattactgatgaa
tacttacaaacaaaggcttcctatgaaaaggaacaggataaggttgtcgccgaaatcgta
ggcattgcagcgggctactcagaatgtctattctgtttatcgcacatcctatctcgcctg
gacgtgttagtttcgttcgccgtagcggcgtcgacggcgccatacccatactgtcgaccc
gtgattactgaagaactcgatgagtttgtcctcaaggaggttcgtcatccctgccttgaa
gtacaagagggtatatcttatatacccaacgatgtggagtttaaacgaggttcgtgtcta
ttgcacgtggtgacaggcgcgaatatgggtggaaaatcaacttggatgcggtcatgcggc
gtggcggcgctattagctcacgcgggttgtatggtgccggcgactactgccatagtgccg
aggttgagagcgctgtgtgcgagagtaggggcttcggatagagaggacaagggacagagc
acctttatgttagaaatggtcgagacagccgccattttgaagactgccacgccggattcc
ctcgtgctggtagacgagctgggaagaggcacctccacgtatgaagggtgcggcatagcg
tgggctgttgctgaggaactagcaacgaattcaaaatgcttctgcctgttcgcgacgcac
taccacgaactgacgcgactggaaagcttgcacccgggcgtgatagtgaactcgcacgcg
gaagccacggtggtggaccaacaactgctgctgctacacaagatcgtaccgggacctgcc
acgcactcactcgggctgcacgtcgccaaacttgccgatttacccgactccattattgag
tatgcagaagctaaacaagcacagttagaaacaaacctttttgaagcagaaacggccgtc
aaatctcaagaaaccaaggaagggcaaaccattatattggactttctgaagaaatgcaag
gagatacaagaatcaaccgcctctgatgaagatatgatgaagcaaatcaattcgttgaag
caaaatgttttgcgacaaaataataagtatgtgcagtcgctcttggcttaa
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