Pectinophora gossypiella (pink bollworm): 126372064
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Entry
126372064 CDS
T09293
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03440
Homologous recombination
pgw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126372064
03450 Non-homologous end-joining
126372064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgw03032
]
126372064
03400 DNA repair and recombination proteins [BR:
pgw03400
]
126372064
DNA replication proteins [BR:
pgw03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
126372064
DNA repair and recombination proteins [BR:
pgw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
126372064
BRCA1-C complex
126372064
NHEJ (non-homologous end-joining)
MRX complex
126372064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
SbcC_Walker_B
AAA_21
AAA_13
AAA_29
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126372064
NCBI-ProteinID:
XP_049873545
LinkDB
All DBs
Position
13:8807991..8821419
Genome browser
AA seq
1304 aa
AA seq
DB search
MADIKTLAVRGIRSFGPDENDEQRISFEKPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SRNECFVHDAKVNRSTEVLGQVKLKIMNAKDKQLEVSRTMKVTALAKKKTKFQTLDSFLS
MIDERGNTKDISSRCADLDFIMNEELGVSKAILNSVIFCHQEDSSWPLDEGKKVKERFDE
IFDADKYSDCFDRLRKLRKDYIQNLKLLELEVTHLTEKKQELDKRKLEVVNTETSISETE
LKISELNQELKPISEKLTAIETLQKNLVQWESKKDKIKNKLEHNKTQEEELKKAIKTIFE
GTLEELQGNISNYESTGKAKQKELTESYKKITSFNKDEEKIANEKTSNEMKYNKLIFLES
QNQERIDKRNKVIVETCKIAGLETPETIDTNEEAEKGISDLTDKVKSLKAELKEMKQAAD
AEEKKYQQVVNETRDAFTRHKQKISNKEVEIATARKDINKLEKQITDAHDAKTRLELLEQ
KLNDAEEEYKQADSELNAEECQQEINEDEKVLDQHEQERDELAEKITKLQKHSAKLKERD
LLEDQLKQKEKQFGVLQNKHRTALTDILGEMPVSNFAMSVNKLEAKVKGEVDAMKKKLKA
NDKELTKLETERNHVREMLKDRRSELTKAEDKMYQACGTQTYEATLSKLTSSVEKLQEEQ
NILQSSMHIFAKYKNQLKDNSCCPLCNRGFENETEVTDLISHLTSQVMNVPAKLEEVTEE
LQRTSAKKDELLGLKTLNEKITSLKENDIPQLETRLSDVDKKISDLQEAMEQVKQSMKEP
EQKQQTAKQIQGEMPLLDKFVQEIKTATRDFESAKSQCEGVEMDMTVDEATAKQAELKQK
ITTLKARIKATQSKLNQHSKKMRQMADKKNKIKEELLNIQKKVQEIVNLQENKKQIEENR
ERFVKELQELQDGVAPLEAELREKESEKNNIVNKNRSSIELKNLSIQNIVNSFDKVKSID
SEIRQHKERNIQREMDKIKEANEKLMEKQKQIMIDRDALTKRIDTLKDELAKQEIYKRDL
EDNLKLRKAQTEIENCAKEEAEINEKLSGVNTEMLEEKGPLITQQTKLFREKAQNEGLMQ
GYQERLKQLRNELKKSQNKDIEKKFREKFYELQVTKTIDKDIQNYAVALEKCLMEFHREK
MEHINLIIREMWRKIYRGNDIDYIEIKTEGSMSTESDRRKYDYRVVQCKNGVEIDMRGRC
SAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDHENVRSLCSALGEIVQERMRQKN
FMFIIITHDKEFIESLGNIDKVTHYYEVSRNEDGKSRIKRIRFS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggctgatataaaaacgttagctgtgaggggcataagaagttttgggcccgacgaaaac
gatgaacaacgtatttcttttgagaagcctctaaccctcatactgggacaaaatggatgt
ggaaagacaacaatcattgaatgtttgcgatatgctattacgggacagatgcctcccggt
agccgaaatgaatgtttcgtacatgatgcgaaagtaaacaggtccacagaggtgctaggg
caagtaaaactcaagatcatgaatgcgaaagacaagcaacttgaagtatcgaggacgatg
aaagtcactgcattggcaaaaaagaagaccaagtttcaaacattggattcatttttatct
atgattgatgagcgtggaaatacaaaggatatttcttcgcgatgcgctgatttggatttt
ataatgaacgaagaactaggtgtatcaaaagctattttgaattccgtaatattctgccac
caagaagactcgagctggcctcttgacgagggtaaaaaagtaaaagaacgctttgatgaa
atctttgatgctgataaatatagtgactgctttgatcgcctgaggaagttgcgaaaagat
tatatccaaaatctaaaacttcttgaactggaagtaacccacttgactgagaagaagcag
gaattagataagaggaagttggaagtagtcaatacagagacgagcatatctgaaactgag
ctgaagatatctgaattgaaccaggagttgaagccaatatctgagaagctcactgccatt
gagacactgcagaagaaccttgtacagtgggaatcaaagaaggataagattaaaaataag
cttgaacacaacaaaactcaggaagaagagttgaagaaggcaatcaaaactattttcgag
ggtacacttgaggaattgcaaggaaatattagtaactatgaatccactgggaaagccaaa
cagaaggagcttacagagtcttataagaagattacttcctttaataaggatgaggagaag
atcgccaatgagaaaacctccaatgaaatgaagtacaataaactgatcttccttgagagt
caaaatcaggagagaattgataagagaaacaaagttattgtggagacctgtaaaattgct
ggcctggagacgccagaaactattgatactaacgaggaagctgaaaagggcatctcagat
ttaactgacaaagtaaagagcttgaaggcagaattaaaagaaatgaaacaagctgccgac
gccgaggagaagaaataccagcaagttgtgaacgaaacccgcgatgcatttactcgacac
aagcagaagatctctaacaaggaggtggaaatagcgaccgcgaggaaagatatcaataag
ttggagaagcaaataacggatgcgcatgatgccaaaactcgtctcgaattgctggagcag
aagttgaacgacgcggaagaagaatataaacaggccgatagtgaactgaatgccgaggag
tgtcaacaagagatcaatgaggacgagaaagttctggatcagcatgaacaggaacgcgac
gaactcgcagaaaagataacgaaactacaaaaacatagcgcaaaattgaaagaaagggat
ctccttgaagaccaattgaagcaaaaagagaagcagtttggcgttctgcagaacaaacat
agaacagcccttactgacatccttggtgagatgccagtgagcaactttgctatgtccgta
aacaaactcgaagcgaaagtcaagggagaggttgatgctatgaagaaaaaactgaaggct
aatgataaagagttaacaaaactggagacggagcgcaaccatgtaagagagatgctgaaa
gaccgtcgcagtgaactgaccaaggcagaggataagatgtaccaggcctgcggtacgcag
acctatgaggccacgctttcgaaactcacctcctctgttgaaaaactacaggaggaacaa
aatatccttcagtcatcgatgcacattttcgctaaatacaaaaatcaactaaaagataac
agctgctgtccactgtgtaaccgcggctttgaaaatgaaacagaggtaacggatctgata
tcccatctaacctctcaagtgatgaatgtgccagcaaagctggaggaagtgactgaggaa
ctacaaagaacttcagctaagaaagatgagctgctaggcttaaagacactcaatgagaag
ataacgagcctcaaagaaaacgacattccgcagttggaaacacgccttagcgacgttgat
aagaaaatctcagacttgcaagaggccatggagcaagtgaagcagtcaatgaaggagccg
gagcagaagcagcagactgccaagcagatccagggcgagatgccgctactagacaagttc
gtgcaggagatcaagaccgccaccagagatttcgaatcagcaaagtcgcaatgcgaaggt
gtagagatggacatgactgtggacgaggcgacggctaagcaagcagagttaaagcagaag
ataaccacgctgaaggcgcgcatcaaggccacgcagtccaaactgaaccagcacagcaag
aagatgcgccagatggccgacaagaaaaacaaaatcaaagaggaactgctcaatatacag
aaaaaggtgcaagaaattgtgaacttgcaagaaaacaagaagcaaatcgaggagaaccgc
gagagattcgtgaaagaactgcaagaactacaagacggtgtcgcgccgctcgaggctgaa
ctccgagaaaaggagagtgagaagaacaacattgtaaataagaacaggagctcaattgaa
ttgaagaacttgtccatacagaacatagtcaactcgtttgacaaagtgaagtctattgac
tctgagatcagacaacataaagagaggaacatccagcgcgaaatggacaagataaaggaa
gctaatgagaaactgatggagaaacagaagcagatcatgatcgacagggacgcactcaca
aaacgaattgatactttgaaagatgaactcgctaaacaagagatttacaaacgcgaccta
gaagataacctgaagttgaggaaagctcaaacagagatagagaattgtgccaaagaggaa
gcggagattaatgagaagttgagtggagtgaacacggagatgttggaagagaaagggcct
ctcatcacgcagcagacgaagctgttccgagagaaggcgcagaacgaaggactgatgcag
gggtaccaggaaagactgaaacaattgagaaatgaactgaagaaatctcaaaataaagac
atagagaagaaattcagggaaaaattctacgagttgcaagtgacaaaaactattgataag
gacattcagaactatgctgtggcgctcgagaaatgtctcatggagttccacagagaaaag
atggagcatatcaatctcatcattagggagatgtggcgcaagatttatagaggaaatgat
atagattacattgagatcaaaactgaaggtagcatgtcaacagaatcagaccgtcgtaaa
tatgattacagagtcgttcaatgtaagaatggtgtggagatagacatgcgaggaaggtgc
agtgccggccaaaaggttttggcttgcttaatcatccggttggctctcgccgaaacattt
agctccaggtttggaatcttagcacttgatgaacctacaaccaatttagaccacgaaaat
gtcagaagtctctgctcagctctgggtgaaatagtgcaggagcgcatgagacaaaagaac
ttcatgttcattattattacgcacgataaggagttcatcgaatccctcggtaacatagac
aaagttacacattactatgaagtatcaagaaatgaagatggtaaatccagaatcaagaga
attaggttttcctaa
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integrated database retrieval system
