Pectinophora gossypiella (pink bollworm): 126372832
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Entry
126372832 CDS
T09293
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126372832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126372832
03041 Spliceosome [BR:
pgw03041
]
126372832
03009 Ribosome biogenesis [BR:
pgw03009
]
126372832
03016 Transfer RNA biogenesis [BR:
pgw03016
]
126372832
Enzymes [BR:
pgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126372832
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126372832
Spliceosome [BR:
pgw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126372832
Complex C
U4/U6.U5 tri-SnRNP related factors
126372832
Ribosome biogenesis [BR:
pgw03009
]
Eukaryotic type
Pre-60S particles
Helicases
126372832
Transfer RNA biogenesis [BR:
pgw03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126372832
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
126372832
NCBI-ProteinID:
XP_049874701
LinkDB
All DBs
Position
2:12104638..12115469
Genome browser
AA seq
1031 aa
AA seq
DB search
MADINNLFDCFDETESNAAIIHFPNIEKDEESSEKKDVQATTSNKRPHEEVEYADTTKKS
KPEEDDPDLISDVNLELLASRIVIHTLETHEGCTHEVAIPPNHDYAPLVQISSEPAKQYS
FILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQ
HYVFPAGGDGIHLVVDEKGQFKEDNFNTAMAVLNNAGDAGKGDQRGRRGGPKGNNQTNIF
NIVKMIMERNFAPVIIFSFSKKDCEAYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEED
RKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTNCQKYDGKDFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDQKMTPTIVKTMVQGK
ADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIEKVKLKQKEYDAI
AVENEHSIASYCNIRTQLDILGGQFRSFITRPEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRHKMDKKGKKGQEVNPLSAEAVIVVDILLHVKKAGEDDAETNVPCPPGETGDVEVVPV
LHTLIYQISSLRVYYPKDLRPADSRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIEEPVFK
ECVDRIKQLEERLYAHPLHNDKNRGALTAAYERKQEMYEDLQQAKNELKKAKSILQMDEL
KKRKRVLRRLGYCTAADVIELKGRIACELSSADELLLTELIFNGVFNNLTSEQSASLVSC
FVCDENSNQSSATGEELRGVLRQLQEFARRIAKVSLDAKMDLDEDEYVGKFKYTLMDVVL
AWAKGASFLQICKMTDVFEGSIIRCMRRLEEVMRQLCQAAKNIGNTDLENKFSDAIKLLK
RDIVFAASLYM
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggctgatataaataatctatttgattgttttgatgaaacagaatcaaatgcagctata
atccattttccaaacatcgagaaagatgaagaatcgtctgaaaagaaagacgtgcaggct
actacaagtaataaacgaccgcatgaggaggtagaatacgcagatacgacaaaaaagtcg
aaaccagaggaagatgatccggatcttataagtgacgtgaatcttgagctccttgcttcg
cgtattgtgatacacacattggagactcatgagggttgcacacacgaggtggccatacct
ccgaaccatgactacgcgccgctagtgcagatatcctctgagcccgcgaaacagtacagt
ttcatactggatccgtttcagaaagaagctatactgtgtattgataacttacaatctgtt
ctggtatccgctcacacttctgctggtaaaacagtggtggctgaatatgctatagccctg
tcattgaagaataaacagagggtaatttacactacaccaataaaggcattgtcaaatcag
aagtacagagagttttctgaggagttccatgatgtagggctcatcaccggagatgttacc
atcaatccatctgcttcatgtcttattatgaccactgagattctgaggaatatgctgtac
agaggatcagagataatgcgtgaagtgggatgggtggtatttgacgaaattcattacatg
agagataaggagagaggtgttgtctgggaagaaaccctgattctcctccccgacaacgtg
cactacgtgtttctctcagccacgatccccaacgcgcgtcagtttgccgagtgggtgtgc
agactgcactcacagccctgccacgtggtctacaccgagtaccgccccactccgctgcaa
cattacgtcttccctgctggaggagacgggatacatcttgttgttgatgaaaagggacaa
tttaaggaagacaacttcaacacagcgatggcggtgctgaacaacgcgggcgacgccggc
aagggtgaccagcgcggccgccgcggcgggcccaaggggaacaaccagacgaacatcttc
aacattgtcaagatgatcatggaacggaacttcgcgcctgtcatcatattcagcttcagc
aagaaagactgcgaggcttatgctatgcagatggccaagctggactttaataccattgag
gagaagaagttggtagacgaggtgttcaacaacgcaatggacgtgctttccgaggaagac
aggaagctgccacaggtggaaaacgtcataccactcctcaggagaggcatcggcatccat
cacggagggcttctgcccatattgaaggaaaccattgagatcttgttcggcttgggactt
ataaaggcattattcgctactgaaacattcgccatgggtctgaacatgcctgccaggaca
gtagttttcacaaactgccagaaatacgacgggaaggactttcgattcatctcgtcaggc
gaatacatccagatgtctggtcgggcgggtcgacgtggtctcgatgacaagggtatagtg
attctcatgatcgatcagaagatgacgcctacaatcgtcaagaccatggtgcaaggcaag
gccgatcccatcaactcggcgttccacctcacttataacatggtactcaatctcttaaga
gtggaagaaataaatccagaatatatgctagagagaagtttcttccagtttcagaaccaa
gccgctattccagatttaatcgaaaaggtaaaacttaaacagaaagagtacgatgcaata
gcagttgaaaatgagcattccatagcgtcgtattgtaacatcaggacgcaactagacatc
cttggtggacagttccgctccttcatcacacggccggagtatctgaaacctttcctgcag
cctggaagacttgtcaaggtaaagacggagaagtacgaatacgactggggcataatagtg
aacttcagacacaagatggacaagaagggcaagaagggacaggaggtgaaccctctgtcc
gcggaggccgttattgtggtcgacatactgcttcatgtgaagaaggcgggggaagatgac
gctgagactaatgtgccttgtcctccaggggagacaggtgacgtggaagtagtgccagtt
cttcatacgttaatctaccagatcagttcactgcgtgtgtactatccaaaagatctgcga
ccggccgacagtcgtaagtcggtactaaaaacaataggagaggtcaaaaaacgcttccct
gagggacccccgctcctaaatccaataaaggacatgaaaattgaagagccagtgttcaaa
gagtgcgtggataggatcaaacagttagaggaaaggttatacgcacatcccttacacaac
gacaaaaaccgaggcgcccttacagcagcttacgaaaggaagcaagagatgtacgaagac
ctacaacaagctaagaatgaactgaagaaagctaagagcatattacaaatggacgagttg
aagaagaggaagcgagtcctgagaaggctcgggtattgtaccgctgctgatgtgatagaa
ctgaagggacggatagcttgcgagctgagcagtgcggatgaactcttactaacggagttg
atattcaacggtgtcttcaacaacctgacgtctgagcagagcgcgtccctcgtcagttgt
ttcgtgtgcgacgagaactccaatcaatcctccgcgacgggagaagagctcagaggtgtc
ctcagacaactgcaggaatttgcccgaagaatagcgaaggtgtcgttagacgcgaagatg
gacctggatgaggacgagtatgttggcaagttcaagtacacactcatggacgtggtgctg
gcttgggccaaaggcgccagcttccttcagatatgcaagatgactgacgtctttgagggt
tcaataatcagatgtatgcgtcgtcttgaagaggtgatgcgccagctgtgccaagcggcc
aagaacatcggtaatacagacttagagaacaaattcagtgacgcaatcaaactgctcaag
agagacatcgtattcgccgccagtttgtacatgtaa
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