Pectinophora gossypiella (pink bollworm): 126373072
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Entry
126373072 CDS
T09293
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126373072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgw03021
]
126373072
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126373072
Transcription machinery [BR:
pgw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126373072
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126373072
U7-dependent histone pre-mRNA processing factors
126373072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
HEAT_MROH2B_C
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
126373072
NCBI-ProteinID:
XP_049875001
LinkDB
All DBs
Position
15:2637532..2654942
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AA seq
1129 aa
AA seq
DB search
MASKYTQPANIAAQNQLVQWINDAGMAEGNKKSDLLRKIIEVLLHQASQMVPVYMDNILS
YSSDKSTEVKKLVVAFIEEISKLHPQYLPKVIGQLRMLVVDSVIAVQKRAIQAASIVYRN
TLIWMCNTEEDVTDLQYVWQHLSELKLIVLNMIDSENEGIRTHSIKFLEEVVLLQTAGDM
SDEGFSLDNLPTHLPFIKRKALEEEAEHIFTLLVKFHNSQHISSVNLMACMTTLCLLAKF
RPKYMPRVVQALGDLHTTLPPTLSQSQVNSVRKHLKMLLVNIIKHPSSNEMLPQLTQLLL
DIGMTTQEINKAIPKERRNKRLGELKSYDAPAKRFRVDSPQSNSQGSDSNSRSDFNFDED
STSAVLPAPITKATATEETIIEGLDTVENVVKLVMATLVNNLPNSMPDDFIQNYKPIPNS
GTKAQKKELAKMLLAVIKNESAPTPPTLIDIAAKIPLLKEDEEKVTLKNAVAKLQESTKA
DRKVESAVSKLMEETRQDHLKEEERRTKEKEKEKEKQIPPPTPTVPKLKQRVKLLKLQEI
TRPIPKEIKEKLMIQAVARILNAEKEAAIGGASQIRAKFISIFASSYTPELRDLILNYIL
EDPSSRIDLALSWLYEEYAFMQGFNRHPVTLQPKVHEKHDQNYNQLLCALITQIFERGEP
AIENAKDILLRKIYLEAPLVTDEAVDYLKHLVTEEKVGFLALELLEELCVMRPPRAHKYM
ASLVCHVLSQNVEIRDMALKLSLKIYGRGTDAVRRTIEKHALLYLGFISLSTPPPELLRG
RTIRVPWTDDMYKICLNLIMGLFLEKEELIMEIARVYGCAGAEAKRCVLRAVEAPLRATM
ARGAPLRPALAALLDDCPRGAETLLTRLVHLLTERAPPSPELVSKVRELYATRVSDVRFL
IPVLSGLSNKEILAALPKLIKLNPVVVKEVFNKLLGNPETDNGPVSPTELLVALHLIDPA
KAELKYIIKATALCFAEKNIFTQDVVSAALQRLSAEPEIPVLLMRSVLQALTLYPTCAPL
AINILELLVEREVWNHKVAWEGWIKCCERLVPASSALLPQLPARALHAALAAAPALLPAL
RAHVLQLPPPDRPGLPPHVLALTTPHQEPTYTPPPVQPNPVEPLPPGME
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtaaatacactcagccagctaatatagctgcgcaaaaccagctggtacaatgg
ataaacgacgctggaatggcggaagggaacaagaagtccgacctgcttcgaaagatcatc
gaggtccttctccatcaagcgtcacaaatggttcctgtgtacatggataacattctcagc
tacagtagcgacaaatccactgaggttaagaagctagttgtggcctttattgaggaaata
agcaaactccatccacaatatctaccgaaggtgatcgggcaacttcgtatgctggttgtg
gacagtgtgatcgcagtgcagaagagagctatccaggcagctagcattgtctaccgcaac
acattaatatggatgtgcaacaccgaagaagacgtcaccgacctacaatatgtgtggcag
catttgtctgagctgaaactaatagtcttgaacatgatagacagcgagaatgaaggcatc
aggacacactccatcaagttccttgaggaggtggtcctgctgcagacggccggagacatg
tccgacgaaggattctctctggacaacttgccaactcatctgccgttcatcaagaggaaa
gctcttgaggaggaggctgaacacatattcactctgttagtcaaattccacaattcacaa
cacatctcaagcgtcaacctgatggcctgcatgacaactctatgtctgctggcgaagttc
cgaccgaagtacatgccgcgagtggtacaggctttgggagacctccacacaaccctacca
ccgacactgtcgcaatcccaagtaaactccgtcagaaaacatctcaagatgttgctcgtg
aacattattaaacacccgtcgtcaaatgagatgctcccacaacttactcagttgctccta
gacattggaatgacgacgcaagagattaacaaagcgatacccaaagaacgaaggaacaaa
cgcttgggagagttgaagagttatgacgctccagctaaaagattcagagtagattcacca
cagagcaacagtcaaggtagtgatagcaacagccgaagcgacttcaactttgacgaagat
agtacaagtgctgtgttacctgcacctataactaaggctacagccaccgaagagacaata
attgaaggcctcgacacggtagagaatgtagtcaaacttgtaatggcgacgttagtaaac
aatctgcccaatagcatgccagatgactttatacaaaactataaacctattcctaactcc
ggaactaaggcacagaagaaagaactagctaaaatgctacttgctgttattaaaaacgaa
tcggcgcctacgcctcctactttgatcgacatcgcagctaaaatacccttgctgaaagaa
gacgaagaaaaagttacactaaagaatgccgtggcaaaactccaagaatcaaccaaagcg
gacagaaaggtggaaagtgcagtttctaagctgatggaggaaacgagacaggatcacttg
aaagaggaggaacgtagaacgaaagagaaagagaaagaaaaggaaaaacagatcccacct
ccgacaccgacagttccgaagttgaagcagagggtaaagttgctgaaactgcaggagata
acgcgacctatacctaaggaaattaaagagaagctgatgatacaagctgtggcgaggatc
ctgaacgctgagaaagaagcagcgataggaggcgcatcgcaaatccgtgccaagttcata
tctatctttgcatcaagctatacccctgaactgcgtgatttgatcctgaattacatactg
gaagacccttccagcagaatcgatttagctttgtcctggttgtatgaagaatatgccttc
atgcaaggttttaatcggcatcctgtgaccttgcagcctaaggttcacgagaaacacgac
cagaattacaatcagcttctttgcgctttgatcacgcagatatttgagagaggcgaaccg
gcaatagagaatgctaaggatattttactgaggaagatatatttagaagctccgctggtt
acggatgaggctgtggactatttgaagcatttggtgacggaagagaaagtcgggtttctg
gcgcttgagctgttagaggagctgtgtgttatgagaccgccgcgagcgcataaatacatg
gcttcgttggtttgtcatgtcttaagtcaaaatgtggagatccgtgatatggcgttgaag
ttatcgctgaagatctatggtcgagggacggacgcggtgcgccggactatagagaaacat
gctctgctttaccttgggttcatatccctgagcacgccgccgccggagctgctgcgcggg
cgcacaatccgcgtgccctggaccgacgacatgtacaagatctgcctcaatttaatcatg
ggactgttcctggagaaggaagagctaataatggagatagcgcgcgtgtacgggtgcgcg
ggcgcggaggccaagcgctgcgtgctgcgcgcggtggaggcgccgctgcgggccaccatg
gcgcgcggggcgccgctgcggcccgcgctggccgcgctgctggacgactgcccgcgcggc
gcagagacgctgctcaccaggctcgtgcatctgctcaccgagagggcgccgccatcgccg
gaactagtatcaaaagtgcgcgagctgtacgcgacgagagtatcggacgtacgattcttg
atccctgttctctccggactgtcaaataaggagattttggcagcgttaccgaagcttata
aaactgaaccctgtggttgtaaaagaagtattcaacaaattgctgggaaatcctgaaacg
gataatgggccagtttctcctacggagttgctggtggcgcttcacctcatagacccggcg
aaggcggaactcaagtacattatcaaggcgacggcactctgcttcgctgagaagaacata
ttcacgcaggacgtagtatcagcagctctgcagaggttgagcgccgagccagagatcccc
gtacttttgatgcgcagtgtgttacaagcactcactctgtaccccacatgcgcccccctc
gctatcaacatactggaattgctggtcgaacgagaggtgtggaaccacaaggtggcgtgg
gaggggtggatcaagtgctgcgagcggctggtgccggcgtccagcgcgctgctgccgcag
ctgccggcgcgggcgctgcacgccgcgctggccgccgcgcccgcgctgctgcccgccctg
cgggcgcacgtgctccagctgccgccgcccgaccggcccggcctgccaccgcatgtgctg
gcgctcactacgccgcatcaggaaccaacgtacacgccgcctcctgtgcagcctaaccca
gtcgagccattacccccaggaatggaatga
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